Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.7e-85 319.3 160 100.0
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 7.8e-67 257.3 143 92.3
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 6.0e-59 231.1 147 84.4
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 4.4e-54 214.9 136 82.4
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 2.2e-53 212.6 136 79.4
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 8.1e-48 194.1 136 75.7
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 9.6e-41 170.6 131 74.0
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 4.9e-37 158.3 139 57.6
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 6.0e-35 151.4 139 57.6
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.1e-34 148.3 139 55.4
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.1e-33 147.1 140 58.6
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.9e-33 146.4 140 55.0
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 1.9e-33 146.4 139 54.7
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 4.3e-33 145.2 139 55.4
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 7.3e-33 144.4 135 55.6
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 9.6e-33 144.1 136 56.6
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 9.6e-33 144.1 135 55.6
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 4.8e-32 141.7 138 55.1
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 8.1e-32 141.0 141 53.9
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.1e-31 140.6 140 54.3
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 5.3e-31 138.3 137 54.0
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 9.0e-31 137.5 140 54.3
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 2.0e-30 136.3 131 57.3
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 9.9e-30 134.0 134 52.2
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 1.3e-29 133.7 141 49.6
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.7e-29 133.3 140 52.1
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 4.9e-29 131.7 138 51.4
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 6.4e-29 131.3 136 52.2
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 6.4e-29 131.3 134 53.0
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 6.4e-29 131.3 138 50.7
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.1e-28 130.6 133 51.9
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.4e-28 130.2 140 50.0
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 1.9e-28 129.8 140 48.6
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 2.4e-28 129.4 123 57.7
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 4.2e-28 128.6 133 52.6
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 4.2e-28 128.6 129 52.7
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 4.2e-28 128.6 128 53.1
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 4.2e-28 128.6 128 53.1
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.2e-28 128.6 144 48.6
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.1e-28 127.9 144 48.6
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 7.1e-28 127.9 173 43.9
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 7.1e-28 127.9 133 49.6
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 7.1e-28 127.9 124 54.8
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 9.3e-28 127.5 127 52.0
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 9.3e-28 127.5 135 51.1
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 9.3e-28 127.5 135 51.1
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 9.3e-28 127.5 132 50.8
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 9.3e-28 127.5 141 48.9
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.6e-27 126.7 144 50.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 2.1e-27 126.3 144 47.9
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.1e-27 126.3 144 47.9
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.1e-27 126.3 144 47.9
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 3.5e-27 125.6 141 48.9
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 4.6e-27 125.2 129 51.2
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.0e-27 124.8 145 46.9
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 6.0e-27 124.8 132 49.2
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 7.9e-27 124.4 146 50.0
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 7.9e-27 124.4 128 53.9
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 3.0e-26 122.5 140 48.6
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 3.0e-26 122.5 134 50.0
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 8.7e-26 120.9 149 46.3
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 8.7e-26 120.9 155 45.8
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 1.5e-25 120.2 130 49.2
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.5e-25 120.2 135 49.6
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.9e-25 119.8 138 54.3
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 2.5e-25 119.4 131 48.9
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 4.3e-25 118.6 141 48.2
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 4.3e-25 118.6 131 49.6
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 4.3e-25 118.6 130 49.2
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 5.6e-25 118.2 131 50.4
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.3e-24 117.1 133 47.4
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 1.3e-24 117.1 133 49.6
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.3e-24 117.1 133 49.6
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 1.6e-24 116.7 131 48.9
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.1e-24 116.3 139 50.4
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.1e-24 116.3 186 42.5
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 2.8e-24 115.9 134 47.8
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.7e-24 115.5 125 52.0
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 6.2e-24 114.8 126 48.4
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.1e-23 114.0 141 47.5
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.4e-23 113.6 138 50.0
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.8e-23 113.2 141 47.5
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.8e-23 113.2 128 50.0
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 3.1e-23 112.5 127 48.0
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 4.0e-23 112.1 134 47.0
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 4.0e-23 112.1 131 48.1
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 6.9e-23 111.3 124 46.0
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 1.2e-22 110.5 154 44.2
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.5e-22 110.2 116 50.9
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 2.6e-22 109.4 139 46.0
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 2.6e-22 109.4 139 46.0
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 4.5e-22 108.6 131 48.9
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 7.6e-22 107.8 127 50.4
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 9.9e-22 107.5 228 33.8
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 1.3e-21 107.1 131 48.9
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 3.8e-21 105.5 133 47.4
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 4.9e-21 105.1 129 48.8
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 4.9e-21 105.1 129 48.8
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 8.4e-21 104.4 165 38.8
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 1.1e-20 104.0 133 45.9
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 2.5e-20 102.8 182 36.3
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 2.5e-20 102.8 130 45.4
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 5.5e-20 101.7 189 37.0
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 9.3e-20 100.9 122 46.7
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 3.5e-19 99.0 132 43.2
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 6.0e-19 98.2 128 46.9
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 1.3e-18 97.1 147 42.9
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 3.0e-18 95.9 129 41.9
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.9e-18 95.5 132 44.7
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.9e-18 95.5 177 40.1
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 3.9e-18 95.5 134 46.3
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 8.7e-18 94.4 134 41.8
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.1e-17 94.0 140 37.9
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 1.9e-17 93.2 145 37.9
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 2.5e-17 92.8 132 45.5
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 7.4e-17 91.3 122 45.1
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 2.8e-16 89.4 143 39.9
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 2.8e-16 89.4 135 41.5
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 3.7e-16 89.0 101 50.5
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.4e-15 87.0 132 37.9
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 1.4e-15 87.0 157 36.3
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 9.0e-15 84.3 163 36.8
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 2.0e-14 83.2 131 40.5
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 2.6e-14 82.8 90 55.6
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.9e-13 78.6 136 39.7
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.2e-11 73.9 96 43.8
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 1.6e-11 73.6 136 36.8
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.9e-10 68.9 217 28.6
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 2.5e-09 66.2 67 50.7
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 3.3e-09 65.9 75 49.3
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 7.4e-09 64.7 62 51.6
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.4e-07 59.7 150 31.3
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 3.1e-07 59.3 42 54.8
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 4.1e-07 58.9 108 33.3
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 6.9e-07 58.2 127 37.8
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 1.5e-06 57.0 90 41.1
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 4.5e-06 55.5 62 53.2
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 5.9e-06 55.1 49 46.9


User provided reference genes

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