Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 6.9e-154 547.4 292 100.0
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.3e-131 473.4 328 82.0
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-100 370.5 235 87.7
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.3e-48 197.6 296 48.6
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 2.9e-43 179.9 251 51.8
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 2.3e-40 170.2 131 74.0
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 7.1e-34 148.7 196 50.0
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.4e-21 107.8 268 36.6
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 1.8e-21 107.5 156 46.2
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 2.0e-20 104.0 179 39.7
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 3.4e-20 103.2 179 39.7
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 7.6e-20 102.1 208 41.8
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 2.2e-19 100.5 194 40.7
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 3.8e-19 99.8 192 39.6
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 8.4e-19 98.6 214 36.4
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 8.4e-19 98.6 214 36.4
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 8.4e-19 98.6 249 35.3
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 4.2e-18 96.3 202 40.1
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 1.2e-17 94.7 204 40.7
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 2.7e-17 93.6 223 38.1
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 2.7e-17 93.6 223 38.1
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.7e-17 93.6 209 37.3
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 6.0e-17 92.4 162 40.7
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 6.0e-17 92.4 209 36.8
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.0e-16 91.7 209 34.4
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 1.3e-16 91.3 213 35.7
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.3e-16 91.3 209 36.4
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 2.3e-16 90.5 171 41.5
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 3.9e-16 89.7 222 36.0
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 5.1e-16 89.4 171 39.2
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 6.7e-16 89.0 166 39.2
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 8.7e-16 88.6 186 36.6
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 1.1e-15 88.2 190 36.8
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.1e-15 88.2 79 58.2
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.5e-15 87.8 129 44.2
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 1.9e-15 87.4 119 43.7
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.9e-15 87.4 223 36.8
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 3.3e-15 86.7 220 35.9
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 3.3e-15 86.7 167 37.7
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 4.3e-15 86.3 210 39.5
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 9.7e-15 85.1 156 41.7
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 9.7e-15 85.1 122 42.6
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 9.7e-15 85.1 160 40.0
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 9.7e-15 85.1 262 32.8
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 9.7e-15 85.1 81 64.2
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 9.7e-15 85.1 81 64.2
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 1.3e-14 84.7 114 43.9
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 1.3e-14 84.7 227 36.1
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.6e-14 84.3 144 40.3
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.6e-14 84.3 144 40.3
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 1.6e-14 84.3 177 37.9
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 2.1e-14 84.0 194 35.6
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.8e-14 83.6 145 40.0
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 3.7e-14 83.2 206 36.4
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 3.7e-14 83.2 153 39.2
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 4.8e-14 82.8 198 33.8
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 4.8e-14 82.8 233 34.8
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 8.2e-14 82.0 331 30.2
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.4e-13 81.3 160 40.0
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 1.4e-13 81.3 160 40.0
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 2.4e-13 80.5 182 36.3
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 4.1e-13 79.7 199 36.7
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.1e-13 79.7 218 33.5
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 6.9e-13 79.0 146 39.0
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 6.9e-13 79.0 78 60.3
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 9.0e-13 78.6 89 50.6
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 9.0e-13 78.6 226 32.3
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 2.0e-12 77.4 87 50.6
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 3.4e-12 76.6 118 39.8
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 4.5e-12 76.3 219 33.8
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 4.5e-12 76.3 162 41.4
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 5.9e-12 75.9 124 39.5
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 7.6e-12 75.5 150 38.0
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 7.6e-12 75.5 117 41.9
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.3e-11 74.7 152 36.2
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.7e-11 74.3 144 37.5
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 2.2e-11 73.9 201 33.8
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 2.9e-11 73.6 128 39.8
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 2.9e-11 73.6 160 36.9
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.9e-11 73.6 85 54.1
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 3.8e-11 73.2 85 50.6
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 3.8e-11 73.2 128 38.3
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 6.5e-11 72.4 87 50.6
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.5e-11 72.4 125 36.8
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 8.5e-11 72.0 51 70.6
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 8.5e-11 72.0 116 38.8
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 1.1e-10 71.6 82 50.0
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.4e-10 71.2 157 37.6
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.9e-10 70.9 125 36.0
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 3.2e-10 70.1 117 37.6
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 5.5e-10 69.3 87 48.3
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 5.5e-10 69.3 87 48.3
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 5.5e-10 69.3 131 37.4
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.2e-09 68.2 142 34.5
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 1.6e-09 67.8 147 35.4
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 2.1e-09 67.4 59 62.7
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 2.7e-09 67.0 205 34.1
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 3.6e-09 66.6 130 36.2
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 4.6e-09 66.2 117 35.9
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 6.1e-09 65.9 128 34.4
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.0e-08 65.1 148 33.8
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.8e-08 64.3 118 33.9
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 2.3e-08 63.9 151 33.8
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 2.3e-08 63.9 117 34.2
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 5.1e-08 62.8 147 34.7
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 5.1e-08 62.8 147 34.7
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 5.1e-08 62.8 189 33.3
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 6.7e-08 62.4 314 28.0
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 6.7e-08 62.4 268 28.7
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 6.7e-08 62.4 235 29.4
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.1e-07 61.6 204 30.9
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 2.5e-07 60.5 151 32.5
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 3.3e-07 60.1 215 26.5
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.3e-07 60.1 71 52.1
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 7.4e-07 58.9 117 33.3
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 7.4e-07 58.9 56 55.4
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 1.3e-06 58.2 95 41.1
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 1.6e-06 57.8 218 32.1
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 3.7e-06 56.6 103 40.8
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 4.8e-06 56.2 311 26.4
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 6.3e-06 55.8 64 51.6


User provided reference genes

Program Settings