Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 3.5e-70 268.1 126 100.0
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.1e-31 140.2 115 67.0
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 2.4e-26 122.5 107 63.6
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 8.4e-24 114.0 110 57.3
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.6e-14 83.2 106 47.2
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.0e-13 80.5 116 43.1
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.3e-13 80.1 113 44.2
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 3.0e-13 79.0 114 47.4
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.9e-13 78.6 116 45.7
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 3.9e-13 78.6 111 45.0
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 3.9e-13 78.6 115 45.2
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 5.1e-13 78.2 71 62.0
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 8.7e-13 77.4 114 44.7
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 8.7e-13 77.4 108 43.5
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-12 76.6 104 48.1
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.5e-12 76.6 104 48.1
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.5e-12 75.9 118 42.4
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 3.3e-12 75.5 103 42.7
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 3.3e-12 75.5 68 58.8
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.3e-12 75.1 104 43.3
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.3e-12 75.1 113 44.2
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 5.6e-12 74.7 112 43.8
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 7.4e-12 74.3 115 42.6
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 7.4e-12 74.3 104 42.3
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 7.4e-12 74.3 77 54.5
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 7.4e-12 74.3 70 61.4
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 9.6e-12 73.9 115 42.6
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.3e-11 73.6 114 46.5
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-11 73.6 76 52.6
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.3e-11 73.6 70 55.7
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.3e-11 73.6 111 45.0
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.3e-11 73.6 111 45.0
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.6e-11 73.2 67 52.2
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.6e-11 73.2 67 52.2
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.1e-11 72.8 112 45.5
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.1e-11 72.8 80 50.0
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.8e-11 72.4 72 55.6
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.8e-11 72.4 85 50.6
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.8e-11 72.4 61 63.9
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 3.6e-11 72.0 58 65.5
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 3.6e-11 72.0 105 41.9
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 3.6e-11 72.0 71 53.5
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.6e-11 72.0 113 41.6
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 4.8e-11 71.6 102 45.1
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.2e-11 71.2 110 44.5
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 8.1e-11 70.9 86 45.3
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.1e-10 70.5 105 44.8
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.4e-10 70.1 57 61.4
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.4e-10 70.1 58 62.1
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.4e-10 70.1 75 53.3
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.8e-10 69.7 74 54.1
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.8e-10 69.7 76 48.7
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.8e-10 69.7 103 42.7
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 1.8e-10 69.7 124 41.9
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.8e-10 69.7 59 66.1
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 3.1e-10 68.9 106 44.3
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 3.1e-10 68.9 73 53.4
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 4.0e-10 68.6 117 41.0
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 4.0e-10 68.6 58 63.8
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 6.9e-10 67.8 77 49.4
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.9e-10 67.8 80 50.0
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 6.9e-10 67.8 70 55.7
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 6.9e-10 67.8 113 41.6
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.2e-09 67.0 115 40.9
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.2e-09 67.0 51 68.6
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 1.2e-09 67.0 65 50.8
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.2e-09 67.0 57 64.9
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.5e-09 66.6 64 53.1
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.5e-09 66.6 64 53.1
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.5e-09 66.6 114 42.1
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.5e-09 66.6 59 59.3
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 2.0e-09 66.2 61 62.3
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 2.0e-09 66.2 106 43.4
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.0e-09 66.2 106 43.4
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 2.6e-09 65.9 101 44.6
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 2.6e-09 65.9 78 51.3
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.5e-09 65.1 106 43.4
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 4.5e-09 65.1 119 41.2
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 5.8e-09 64.7 76 48.7
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 5.8e-09 64.7 71 54.9
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 7.6e-09 64.3 48 62.5
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 7.6e-09 64.3 119 42.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 9.9e-09 63.9 72 52.8
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 9.9e-09 63.9 109 41.3
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.9e-09 63.9 70 52.9
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.9e-09 63.9 95 46.3
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 9.9e-09 63.9 71 54.9
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 9.9e-09 63.9 107 37.4
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 1.7e-08 63.2 69 55.1
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 1.7e-08 63.2 90 45.6
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.2e-08 62.8 82 43.9
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 2.9e-08 62.4 37 78.4
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.9e-08 62.4 71 50.7
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.9e-08 62.4 60 50.0
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.9e-08 62.4 47 59.6
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 3.8e-08 62.0 81 46.9
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.8e-08 62.0 106 41.5
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 4.9e-08 61.6 89 43.8
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 6.4e-08 61.2 48 62.5
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 8.4e-08 60.8 74 48.6
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 8.4e-08 60.8 78 46.2
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 8.4e-08 60.8 66 54.5
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.1e-07 60.5 118 33.9
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.4e-07 60.1 80 42.5
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 1.9e-07 59.7 74 45.9
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 1.9e-07 59.7 116 35.3
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 1.9e-07 59.7 118 34.7
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.4e-07 59.3 84 42.9
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 2.4e-07 59.3 46 65.2
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 3.2e-07 58.9 49 57.1
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 5.5e-07 58.2 112 40.2
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 5.5e-07 58.2 65 50.8
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 5.5e-07 58.2 39 71.8
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.1e-07 57.8 93 37.6
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 7.1e-07 57.8 42 66.7
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 9.3e-07 57.4 62 46.8
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.6e-06 56.6 73 42.5
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.1e-06 56.2 63 52.4
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 3.5e-06 55.5 84 39.3
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 4.6e-06 55.1 51 58.8
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 4.6e-06 55.1 50 56.0
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.6e-06 55.1 62 53.2
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 6.0e-06 54.7 107 37.4
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 7.9e-06 54.3 43 65.1
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 7.9e-06 54.3 35 71.4


User provided reference genes

Program Settings