Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 7.9e-175 617.1 328 100.0
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 2.7e-130 469.2 328 82.0
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 9.5e-120 434.1 251 93.2
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.0e-65 254.6 294 55.8
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 2.9e-60 236.5 267 58.4
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 3.6e-58 229.6 147 84.4
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 1.6e-50 204.1 194 60.8
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 5.5e-35 152.5 181 49.7
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 8.0e-34 148.7 202 49.0
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 1.0e-33 148.3 194 49.5
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.8e-33 147.5 203 47.8
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 2.3e-33 147.1 208 49.5
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 2.3e-33 147.1 179 48.6
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 3.0e-33 146.7 179 48.6
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 4.0e-33 146.4 204 49.0
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 6.8e-33 145.6 268 41.8
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 2.0e-32 144.1 130 59.2
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 4.4e-32 142.9 249 40.6
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 5.7e-32 142.5 201 45.8
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 5.7e-32 142.5 201 45.8
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 5.7e-32 142.5 214 47.2
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 7.5e-32 142.1 156 53.2
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 2.2e-31 140.6 214 41.6
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 2.8e-31 140.2 156 52.6
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.1e-30 138.3 201 43.8
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.4e-30 137.9 209 45.0
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 7.0e-30 135.6 128 57.8
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.2e-29 134.8 191 47.1
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.2e-29 134.8 129 56.6
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 4.5e-29 132.9 164 47.0
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 5.9e-29 132.5 218 44.0
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 7.7e-29 132.1 222 41.9
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 1.0e-28 131.7 123 56.1
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 1.3e-28 131.3 215 40.9
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 1.7e-28 131.0 117 60.7
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.7e-28 131.0 153 49.0
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 2.2e-28 130.6 156 51.9
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 2.2e-28 130.6 229 44.5
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 2.9e-28 130.2 166 46.4
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 2.9e-28 130.2 235 41.3
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 3.8e-28 129.8 155 48.4
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 3.8e-28 129.8 222 41.4
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 5.0e-28 129.4 204 44.1
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 6.5e-28 129.0 207 43.0
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.5e-28 129.0 144 50.0
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 8.5e-28 128.6 130 53.1
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 8.5e-28 128.6 299 37.8
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.1e-27 128.3 144 50.0
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.1e-27 128.3 144 50.0
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.1e-27 128.3 144 50.0
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 1.1e-27 128.3 196 40.3
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.5e-27 127.9 208 43.3
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 3.2e-27 126.7 205 42.4
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.2e-27 126.7 163 46.6
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 3.2e-27 126.7 149 47.0
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 5.5e-27 125.9 156 48.1
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 5.5e-27 125.9 228 38.6
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.2e-26 124.8 219 40.6
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.2e-26 124.8 130 53.1
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 1.2e-26 124.8 130 53.1
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 1.2e-26 124.8 133 52.6
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 1.2e-26 124.8 213 41.8
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.6e-26 124.4 150 49.3
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 1.6e-26 124.4 221 41.6
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 2.1e-26 124.0 153 47.7
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 2.1e-26 124.0 156 46.8
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 4.7e-26 122.9 158 48.7
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 8.0e-26 122.1 343 32.9
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.0e-25 121.7 166 45.2
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 3.0e-25 120.2 221 39.8
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 5.2e-25 119.4 203 41.4
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 6.8e-25 119.0 205 40.5
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 6.8e-25 119.0 186 40.9
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.2e-24 118.2 152 46.7
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 2.0e-24 117.5 199 43.2
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.0e-24 117.5 162 50.6
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.4e-24 116.7 134 51.5
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 5.7e-24 115.9 128 48.4
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.3e-23 114.8 144 47.2
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 2.2e-23 114.0 126 51.6
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 2.2e-23 114.0 271 37.3
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 6.3e-23 112.5 214 38.3
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 8.3e-23 112.1 125 48.8
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.8e-22 110.9 205 41.5
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 2.4e-22 110.5 341 33.4
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.4e-22 110.5 134 50.7
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.4e-22 110.5 306 35.3
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 1.6e-21 107.8 181 38.1
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 2.0e-21 107.5 194 42.3
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.7e-21 107.1 128 51.6
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 3.5e-21 106.7 142 49.3
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 3.5e-21 106.7 142 49.3
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 3.5e-21 106.7 130 48.5
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 7.8e-21 105.5 141 48.9
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 7.8e-21 105.5 134 50.7
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 1.0e-20 105.1 233 39.5
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 1.0e-20 105.1 124 49.2
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 1.0e-20 105.1 124 49.2
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 2.3e-20 104.0 141 47.5
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 2.9e-20 103.6 198 37.9
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 3.8e-20 103.2 203 36.9
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 5.0e-20 102.8 129 48.1
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 5.0e-20 102.8 129 48.1
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 8.6e-20 102.1 122 48.4
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 8.6e-20 102.1 157 43.9
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.9e-19 100.9 245 36.7
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.9e-19 100.9 282 36.5
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 3.3e-19 100.1 155 41.3
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 7.3e-19 99.0 195 39.5
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 9.5e-19 98.6 212 33.0
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 6.1e-18 95.9 126 46.0
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 1.4e-17 94.7 149 44.3
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 4.0e-17 93.2 158 40.5
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 8.9e-17 92.0 299 32.8
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 8.9e-17 92.0 123 48.8
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.5e-16 91.3 126 46.8
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 1.5e-16 91.3 235 34.0
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 2.0e-16 90.9 158 39.9
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 2.2e-15 87.4 101 52.5
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 4.9e-15 86.3 115 41.7
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 4.9e-15 86.3 197 35.0
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.2e-14 83.6 274 31.4
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 9.2e-14 82.0 101 56.4
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.6e-13 81.3 174 36.2
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 2.3e-12 77.4 174 38.5
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 2.3e-12 77.4 225 35.6
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 8.6e-12 75.5 239 31.8
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 1.1e-11 75.1 231 33.8
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.1e-11 75.1 309 30.4
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 2.8e-10 70.5 67 55.2
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 2.8e-10 70.5 172 34.9
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 8.0e-10 68.9 62 56.5
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 6.8e-09 65.9 271 31.4
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 3.4e-08 63.5 86 43.0
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.7e-07 61.2 84 39.3
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 2.2e-07 60.8 108 35.2
SMO137G0159 Selaginella moellendorffii HOM05D004925 ORTHO05D005643 3.7e-07 60.1 137 34.3
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 6.4e-07 59.3 90 44.4
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 8.3e-07 58.9 197 31.0


User provided reference genes

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