Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 2.9e-129 465.3 247 100.0
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 3.2e-120 435.3 251 93.2
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 7.4e-101 370.9 235 87.7
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 6.1e-71 271.6 304 56.6
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.6e-66 256.9 143 92.3
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 3.5e-66 255.8 263 60.8
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 1.8e-54 216.9 208 60.6
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 1.1e-38 164.5 194 50.0
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 2.9e-36 156.4 221 48.9
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 8.4e-36 154.8 262 40.8
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 1.1e-35 154.5 207 47.8
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 2.4e-35 153.3 217 47.9
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 4.2e-35 152.5 281 40.9
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 4.2e-35 152.5 216 47.7
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.4e-35 152.1 169 52.1
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 2.1e-34 150.2 169 51.5
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 2.7e-34 149.8 205 46.8
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 4.6e-34 149.1 189 46.0
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 6.0e-34 148.7 189 46.0
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 2.5e-32 143.3 177 46.3
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 4.3e-32 142.5 141 55.3
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.3e-31 141.0 219 45.7
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.8e-31 139.8 219 43.4
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 3.6e-31 139.4 141 54.6
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 4.8e-31 139.0 201 45.8
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.1e-30 137.9 201 44.8
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.1e-30 137.9 201 44.8
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.4e-30 137.5 213 42.3
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 1.4e-30 137.5 159 49.1
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 2.4e-30 136.7 300 37.7
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 6.9e-30 135.2 179 46.4
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 9.0e-30 134.8 210 42.4
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 2.0e-29 133.7 161 50.9
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 2.0e-29 133.7 122 59.0
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.6e-29 133.3 175 45.7
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 2.6e-29 133.3 142 52.8
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 3.4e-29 132.9 209 40.2
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 4.5e-29 132.5 222 41.9
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.5e-29 132.5 157 47.8
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 4.5e-29 132.5 230 42.2
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 5.8e-29 132.1 226 43.8
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 7.6e-29 131.7 157 47.8
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.6e-29 131.7 157 47.8
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.6e-29 131.7 157 47.8
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 7.6e-29 131.7 225 40.9
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 9.9e-29 131.3 156 47.4
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.3e-28 131.0 159 49.1
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 1.7e-28 130.6 235 40.4
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 1.7e-28 130.6 210 42.9
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.7e-28 130.6 176 44.9
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 1.7e-28 130.6 228 39.5
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.9e-28 129.8 135 51.1
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 2.9e-28 129.8 217 42.9
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 4.9e-28 129.0 128 53.1
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 4.9e-28 129.0 136 52.9
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 6.4e-28 128.6 209 39.2
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 1.4e-27 127.5 159 47.8
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 1.9e-27 127.1 228 38.6
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 1.9e-27 127.1 233 39.9
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 2.4e-27 126.7 166 45.2
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 2.4e-27 126.7 179 45.3
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 4.2e-27 125.9 192 42.2
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 4.2e-27 125.9 135 51.1
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 4.2e-27 125.9 135 51.1
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 7.1e-27 125.2 157 47.1
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 2.1e-26 123.6 160 46.9
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.7e-26 123.2 208 40.9
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.6e-26 122.5 208 40.9
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 7.9e-26 121.7 162 46.9
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.0e-25 121.3 172 49.4
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.3e-25 120.2 139 50.4
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 3.9e-25 119.4 203 40.9
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 3.9e-25 119.4 224 39.3
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 6.7e-25 118.6 224 37.9
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 1.1e-24 117.9 130 47.7
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.5e-24 117.5 199 42.7
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.5e-24 117.5 149 45.6
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.9e-24 117.1 157 43.9
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 1.9e-24 117.1 128 49.2
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 2.5e-24 116.7 133 48.9
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.3e-24 115.9 274 37.2
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 9.6e-24 114.8 218 40.8
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.3e-23 114.4 139 48.9
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.1e-23 113.6 140 47.1
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.8e-23 113.2 138 50.0
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 6.2e-23 112.1 134 47.8
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 6.2e-23 112.1 134 47.8
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 1.1e-22 111.3 192 37.5
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.1e-22 111.3 276 36.6
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.4e-22 110.9 293 32.4
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 2.4e-22 110.2 199 41.2
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 4.0e-22 109.4 139 46.8
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 4.0e-22 109.4 139 46.8
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 4.0e-22 109.4 313 32.6
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 6.9e-22 108.6 238 38.2
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 6.9e-22 108.6 139 48.9
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 9.0e-22 108.2 214 37.4
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 9.0e-22 108.2 146 47.3
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 1.5e-21 107.5 142 48.6
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 1.5e-21 107.5 142 48.6
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 2.6e-21 106.7 146 45.9
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.0e-20 104.8 250 36.4
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 3.8e-20 102.8 210 36.2
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 4.9e-20 102.4 122 47.5
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 4.9e-20 102.4 266 34.6
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 8.4e-20 101.7 155 41.3
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.9e-19 100.5 198 39.4
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.9e-19 100.5 257 37.0
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 3.2e-19 99.8 245 33.9
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 3.2e-19 99.8 151 45.0
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 3.2e-19 99.8 157 43.3
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.2e-18 97.8 206 34.5
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.1e-18 97.1 128 47.7
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 4.6e-18 95.9 132 43.2
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 6.0e-18 95.5 222 32.0
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 7.9e-18 95.1 208 35.6
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.9e-17 92.8 134 44.8
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 5.1e-17 92.4 162 39.5
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 3.3e-16 89.7 171 38.0
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 2.1e-15 87.0 101 50.5
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 4.8e-15 85.9 115 40.9
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.1e-14 84.7 251 33.1
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.1e-14 82.8 180 35.6
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 4.1e-14 82.8 90 55.6
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 7.6e-13 78.6 246 32.1
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 8.4e-12 75.1 230 33.5
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.9e-11 73.9 225 35.1
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.6e-10 69.3 305 27.9
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 7.9e-10 68.6 156 35.9
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.3e-09 67.8 67 53.7
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.3e-09 67.0 251 30.3
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 3.9e-09 66.2 62 54.8
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 2.2e-07 60.5 108 35.2
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 3.7e-07 59.7 90 44.4
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 3.7e-07 59.7 127 38.6
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 8.2e-07 58.5 86 40.7
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 3.1e-06 56.6 84 36.9
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 4.1e-06 56.2 197 30.5
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 9.0e-06 55.1 76 42.1


User provided reference genes

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