Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0341611 Helianthus annuus HOM05D063528 ORTHO05D225737 3.2e-80 301.6 144 100.0
HanXRQChr05g0129771 Helianthus annuus HOM05D063528 ORTHO05D223053 6.2e-23 111.3 51 100.0
HanXRQChr14g0456851 Helianthus annuus HOM05D002800 ORTHO05D008563 7.1e-19 97.8 61 80.3
ECA238G0500 Erigeron canadensis HOM05D002800 ORTHO05D008563 1.7e-17 93.2 61 77.0
Lsat_1_v5_gn_2_112341 Lactuca sativa HOM05D002800 ORTHO05D008563 1.9e-16 89.7 61 75.4
DCAR_006435 Daucus carota HOM05D002800 ORTHO05D008563 1.4e-14 83.6 61 68.9
Lj1C913T2 Lonicera japonica HOM05D002800 ORTHO05D008563 2.4e-14 82.8 61 67.2
Potri.008G039200 Populus trichocarpa HOM05D002800 ORTHO05D008563 2.6e-13 79.3 61 67.2
SalBow4G0916 Salvia bowleyana HOM05D002800 ORTHO05D008563 3.4e-13 79.0 47 78.7
CDE08G1164 Ceratophyllum demersum HOM05D002800 ORTHO05D008563 4.5e-13 78.6 61 67.2
Oeu031346.1 Olea europaea HOM05D002800 ORTHO05D008563 5.8e-13 78.2 61 62.3
CsaV3_6G036460 Cucumis sativus L. HOM05D002800 ORTHO05D008563 7.6e-13 77.8 61 62.3
Migut.F01983 Erythranthe guttata HOM05D002800 ORTHO05D008563 7.6e-13 77.8 61 62.3
Glyma.10G210700 Glycine max HOM05D002800 ORTHO05D008563 7.6e-13 77.8 61 63.9
Gohir.A10G205400 Gossypium hirsutum HOM05D002800 ORTHO05D008563 7.6e-13 77.8 61 65.6
Gohir.D10G213700 Gossypium hirsutum HOM05D002800 ORTHO05D008563 7.6e-13 77.8 61 65.6
MBI07_g26016_MAGBIO Magnolia biondii HOM05D002800 ORTHO05D008563 9.9e-13 77.4 61 62.3
Medtr1g094980 Medicago truncatula HOM05D002800 ORTHO05D008563 9.9e-13 77.4 61 63.9
Dinv36436 Davidia involucrata HOM05D002800 ORTHO05D008563 1.3e-12 77.0 61 60.7
Nn2g10811 Nelumbo nucifera HOM05D002800 ORTHO05D008563 1.3e-12 77.0 61 63.9
Sc09g0006270 Simmondsia chinensis HOM05D002800 ORTHO05D008563 1.3e-12 77.0 61 60.7
Duzib106G1770 Durio zibethinus HOM05D002800 ORTHO05D008563 1.7e-12 76.6 61 65.6
Glyma.20G179900 Glycine max HOM05D002800 ORTHO05D008563 1.7e-12 76.6 61 63.9
RcHm_v2.0_Chr1g0363251 Rosa chinensis HOM05D002800 ORTHO05D008563 1.7e-12 76.6 61 62.3
Sed0015272 Sechium edule HOM05D002800 ORTHO05D008563 1.7e-12 76.6 61 62.3
Aqoxy1G01227 Aquilegia oxysepala HOM05D002800 ORTHO05D008563 2.2e-12 76.3 61 62.3
ClCG08G007530 Citrullus lanatus HOM05D002800 ORTHO05D008563 2.2e-12 76.3 61 60.7
Solyc04g005030.4 Solanum lycopersicum HOM05D002800 ORTHO05D008563 2.2e-12 76.3 62 59.7
TAR369G0845 Trochodendron aralioides HOM05D002800 ORTHO05D008563 2.2e-12 76.3 61 63.9
Ciclev10031045m.g Citrus clementina HOM05D002800 ORTHO05D008563 2.9e-12 75.9 61 63.9
Prupe.2G213100 Prunus persica HOM05D002800 ORTHO05D008563 2.9e-12 75.9 61 62.3
PGR044G1821 Punica granatum HOM05D002800 ORTHO05D008563 2.9e-12 75.9 61 62.3
Rhsim09G0151400 Rhododendron simsii HOM05D002800 ORTHO05D008563 2.9e-12 75.9 61 60.7
Sabra08G0026900 Salix brachista HOM05D002800 ORTHO05D008563 2.9e-12 75.9 61 65.6
Thecc.10G075100 Theobroma cacao HOM05D002800 ORTHO05D008563 2.9e-12 75.9 61 63.9
MELO3C019799.2 Cucumis melo HOM05D002800 ORTHO05D008563 3.8e-12 75.5 61 59.0
Mapoly0011s0106 Marchantia polymorpha HOM05D002800 ORTHO05D008563 3.8e-12 75.5 61 60.7
PSO339G3461 Papaver somniferum HOM05D002800 ORTHO05D008563 3.8e-12 75.5 61 59.0
Cpa.g.sc53.86 Carica papaya HOM05D002800 ORTHO05D008563 4.9e-12 75.1 61 62.3
FvH4_7g19370 Fragaria vesca HOM05D002800 ORTHO05D008563 4.9e-12 75.1 61 62.3
FAN06G4795 Fragaria x ananassa HOM05D002800 ORTHO05D008563 4.9e-12 75.1 61 62.3
Phvul.007G094900 Phaseolus vulgaris HOM05D002800 ORTHO05D008563 4.9e-12 75.1 61 60.7
Potri.010G223000 Populus trichocarpa HOM05D002800 ORTHO05D008563 4.9e-12 75.1 61 62.3
QL08p055739 Quercus lobata HOM05D002800 ORTHO05D008563 6.4e-12 74.7 61 62.3
Sabra10G0172400 Salix brachista HOM05D002800 ORTHO05D008563 6.4e-12 74.7 61 63.9
Atru.chr12.759 Acer truncatum HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 60.7
Atru.chr12.783 Acer truncatum HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 60.7
arahy.Tifrunner.gnm1.ann1.681S5P Arachis hypogaea HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 62.3
arahy.Tifrunner.gnm1.ann1.KPC10E Arachis hypogaea HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 62.3
EL10Ac7g17090 Beta vulgaris HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 60.7
AUR62006403 Chenopodium quinoa HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 60.7
AUR62029746 Chenopodium quinoa HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 60.7
Cc02_g11310 Coffea canephora HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 60.7
FAN10G3729 Fragaria x ananassa HOM05D002800 ORTHO05D008563 8.4e-12 74.3 61 60.7
PGSC0003DMG400001912 Solanum tuberosum HOM05D002800 ORTHO05D008563 1.1e-11 73.9 61 59.0
THA.LOC104799379 Tarenaya hassleriana HOM05D002800 ORTHO05D008563 1.1e-11 73.9 61 63.9
FAN10G1943 Fragaria x ananassa HOM05D002800 ORTHO05D008563 1.4e-11 73.6 61 60.7
ATR0048G007 Amborella trichopoda HOM05D002800 ORTHO05D008563 1.9e-11 73.2 61 59.0
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 1.9e-11 73.2 61 62.3
Eucgr.J01084 Eucalyptus grandis HOM05D002800 ORTHO05D008563 1.9e-11 73.2 61 59.0
CANSAT56G2733 Cannabis sativa HOM05D002800 ORTHO05D008563 2.4e-11 72.8 61 60.7
CiPaw.01G272300 Carya illinoinensis HOM05D002800 ORTHO05D008563 2.4e-11 72.8 76 52.6
Gorai.011G239000 Gossypium raimondii HOM05D002800 ORTHO05D008563 2.4e-11 72.8 59 64.4
unitig_8.g4691 Utricularia gibba HOM05D002800 ORTHO05D008563 2.4e-11 72.8 46 71.7
GSVIVG01016267001 Vitis vinifera HOM05D002800 ORTHO05D008563 2.4e-11 72.8 61 59.0
Lj5g0013059 Lotus japonicus HOM05D002800 ORTHO05D008563 3.2e-11 72.4 61 60.7
Lalb_Chr02g0142211 Lupinus albus HOM05D002800 ORTHO05D008563 3.2e-11 72.4 61 60.7
Lalb_Chr06g0162361 Lupinus albus HOM05D002800 ORTHO05D008563 3.2e-11 72.4 61 59.0
MD01G1108200 Malus domestica HOM05D002800 ORTHO05D008563 3.2e-11 72.4 61 59.0
VMungo0720G2543 Vigna mungo HOM05D002800 ORTHO05D008563 3.2e-11 72.4 61 59.0
AagrBONN_evm.TU.Sc2ySwM_117.2596 Anthoceros agrestis HOM05D002800 ORTHO05D008563 4.2e-11 72.0 61 60.7
FAN03G0883 Fragaria x ananassa HOM05D002800 ORTHO05D008563 5.4e-11 71.6 61 59.0
Pp3c20_2120 Physcomitrium patens HOM05D002800 ORTHO05D008563 5.4e-11 71.6 61 55.7
SMO144G0140 Selaginella moellendorffii HOM05D002800 ORTHO05D008563 5.4e-11 71.6 61 59.0
CAN.G839.3 Capsicum annuum HOM05D002800 ORTHO05D008563 7.1e-11 71.2 61 55.7
Nitab4.5_0001053g0090 Nicotiana tabacum HOM05D002800 ORTHO05D008563 7.1e-11 71.2 61 57.4
Nitab4.5_0002524g0030 Nicotiana tabacum HOM05D002800 ORTHO05D008563 7.1e-11 71.2 61 57.4
PSO384G1174 Papaver somniferum HOM05D002800 ORTHO05D008563 7.1e-11 71.2 61 57.4
TPR.G1920 Trifolium pratense HOM05D002800 ORTHO05D008563 9.3e-11 70.9 61 60.7
TWI15G0073 Tripterygium wilfordii HOM05D002800 ORTHO05D008563 9.3e-11 70.9 61 63.9
AT5G17530 Arabidopsis thaliana HOM05D002800 ORTHO05D008563 7.9e-10 67.8 61 57.4
CARHR195660 Cardamine hirsuta HOM05D002800 ORTHO05D008563 7.9e-10 67.8 61 57.4
Thhalv10012819m.g Eutrema salsugineum HOM05D002800 ORTHO05D008563 7.9e-10 67.8 61 57.4
Os07g0447800 Oryza sativa ssp. japonica HOM05D002800 ORTHO05D008563 7.9e-10 67.8 61 57.4
Carub.0006s1576 Capsella rubella HOM05D002800 ORTHO05D008563 1.3e-09 67.0 61 57.4
Sp6g26690 Schrenkiella parvula HOM05D002800 ORTHO05D008563 1.3e-09 67.0 61 57.4
Aa31sc262G50 Aethionema arabicum HOM05D002800 ORTHO05D008563 1.8e-09 66.6 61 57.4
AL6G28620 Arabidopsis lyrata HOM05D002800 ORTHO05D008563 1.8e-09 66.6 61 57.4
BcaC03g13525 Brassica carinata HOM05D002800 ORTHO05D008563 1.8e-09 66.6 61 57.4
A02p04250 Brassica napus HOM05D002800 ORTHO05D008563 1.8e-09 66.6 61 57.4
C02p09130 Brassica napus HOM05D002800 ORTHO05D008563 1.8e-09 66.6 61 57.4
BolC2t06825H Brassica oleracea HOM05D002800 ORTHO05D008563 1.8e-09 66.6 61 57.4
BraA02t05388Z Brassica rapa HOM05D002800 ORTHO05D008563 1.8e-09 66.6 61 57.4
Peaxi162Scf01011g00005 Petunia axillaris HOM05D002800 ORTHO05D008563 1.8e-09 66.6 63 55.6
HanXRQChr16g0502991 Helianthus annuus HOM05D002800 ORTHO05D008563 1.1e-08 63.9 47 70.2
Hund20229 Selenicereus undatus HOM05D002800 ORTHO05D008563 8.1e-07 57.8 29 89.7
Haze_16886 Corylus avellana HOM05D002800 ORTHO05D008563 4.0e-06 55.5 104 36.5
SHI08822 Sapria himalayana HOM05D002800 ORTHO05D008563 5.3e-06 55.1 49 61.2


User provided reference genes

Program Settings