Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.0e-155 552.4 279 100.0
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.7e-138 496.1 299 85.6
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 6.4e-133 477.6 297 83.2
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 3.2e-132 475.3 296 83.4
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.8e-119 433.0 300 73.3
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 4.0e-119 431.8 300 74.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 4.9e-117 424.9 300 72.3
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 2.4e-116 422.5 316 69.9
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 3.2e-116 422.2 300 72.0
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 4.2e-116 421.8 300 73.0
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 5.4e-116 421.4 300 72.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 9.3e-116 420.6 300 71.7
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 2.1e-115 419.5 300 71.0
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.7e-115 419.1 300 71.0
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 4.6e-115 418.3 300 71.3
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 6.0e-115 417.9 300 71.3
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 7.8e-115 417.5 300 70.7
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 7.8e-115 417.5 302 71.2
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.0e-114 417.2 300 70.3
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.3e-114 416.8 300 70.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.7e-114 416.4 300 71.0
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.3e-114 416.0 300 71.3
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.3e-114 416.0 300 71.0
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.0e-114 415.6 302 71.5
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 5.1e-114 414.8 300 70.7
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 5.1e-114 414.8 300 71.0
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 8.7e-114 414.1 300 71.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 8.7e-114 414.1 300 70.7
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.1e-113 413.7 300 70.3
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.9e-113 412.9 300 70.3
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.9e-113 412.9 300 70.3
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.9e-113 412.9 300 70.7
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 2.5e-113 412.5 287 71.8
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 3.3e-113 412.1 299 69.6
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 3.3e-113 412.1 298 69.5
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 4.3e-113 411.8 300 70.0
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.6e-113 411.4 300 70.0
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 7.3e-113 411.0 300 70.7
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 9.6e-113 410.6 301 69.4
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 9.6e-113 410.6 300 68.7
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 1.6e-112 409.8 300 69.7
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 2.1e-112 409.5 299 69.6
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 4.8e-112 408.3 302 67.9
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 4.8e-112 408.3 300 70.0
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 4.8e-112 408.3 300 70.3
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 6.2e-112 407.9 300 69.7
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 8.1e-112 407.5 300 69.0
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 8.1e-112 407.5 302 71.2
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 1.4e-111 406.8 300 70.0
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 1.8e-111 406.4 300 70.7
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 3.1e-111 405.6 300 70.3
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 3.1e-111 405.6 300 68.7
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 3.1e-111 405.6 300 67.7
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 4.0e-111 405.2 300 67.7
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 4.0e-111 405.2 301 68.4
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 6.9e-111 404.4 300 69.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 6.9e-111 404.4 300 68.3
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 9.0e-111 404.1 300 67.7
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 9.0e-111 404.1 300 67.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 9.0e-111 404.1 299 68.9
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.2e-110 403.7 301 68.1
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.5e-110 403.3 300 68.7
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.0e-110 402.9 300 68.0
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.0e-110 402.9 300 68.7
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.6e-110 402.5 299 67.9
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.6e-110 402.5 300 68.7
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.5e-110 401.7 299 68.2
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.5e-110 401.7 297 68.7
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 5.8e-110 401.4 300 68.0
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.2e-109 399.4 302 67.9
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 2.9e-109 399.1 302 67.5
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.8e-109 398.7 300 69.7
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 4.9e-109 398.3 300 67.3
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 6.4e-109 397.9 300 67.7
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 8.4e-109 397.5 298 67.4
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 4.2e-108 395.2 300 66.3
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 5.4e-108 394.8 299 66.9
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.4e-108 394.8 322 64.0
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 9.3e-108 394.0 300 68.7
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.2e-107 393.7 300 66.7
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.0e-106 390.6 304 67.8
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.0e-106 390.6 303 66.7
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.0e-106 390.6 300 67.0
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.3e-106 390.2 302 67.2
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.3e-106 390.2 299 66.2
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.3e-106 389.4 304 67.4
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 5.1e-106 388.3 300 68.0
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 6.7e-106 387.9 299 65.2
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.1e-105 387.1 302 66.9
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 1.1e-105 387.1 302 67.2
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.1e-105 387.1 302 67.2
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 2.5e-105 386.0 302 67.2
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 3.3e-105 385.6 304 66.4
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 9.6e-105 384.0 304 67.1
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.3e-104 383.6 304 66.8
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.3e-104 383.6 304 66.1
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.6e-104 383.3 303 65.7
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.1e-104 382.9 302 66.6
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.8e-104 382.5 302 66.6
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 2.8e-104 382.5 303 66.7
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.6e-104 382.1 303 65.3
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 3.6e-104 382.1 304 66.4
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 4.0e-103 378.6 300 63.7
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.0e-102 376.3 302 64.9
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.6e-102 375.9 335 62.4
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 3.4e-102 375.6 299 64.9
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 9.9e-102 374.0 300 65.7
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 2.9e-101 372.5 291 64.9
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 2.4e-100 369.4 316 62.7
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 7.1e-100 367.9 300 64.3
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 6.0e-99 364.8 300 64.0
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.8e-98 363.2 306 62.7
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 3.9e-98 362.1 301 63.1
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 1.1e-97 360.5 340 57.6
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 3.3e-97 359.0 241 75.1
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 3.3e-97 359.0 249 71.9
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.7e-93 346.7 259 66.8
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 4.9e-93 345.1 299 60.5
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.5e-92 341.7 280 64.6
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 6.0e-91 338.2 294 58.2
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 5.1e-90 335.1 293 59.7
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 1.5e-89 333.6 307 59.9
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 1.6e-88 330.1 340 52.9
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 2.8e-88 329.3 288 59.4
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 4.8e-88 328.6 302 59.9
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.1e-87 327.4 510 40.6
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 8.7e-82 307.8 300 56.3
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.3e-80 303.9 298 56.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 4.1e-79 298.9 298 54.4
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 6.5e-77 291.6 290 53.1
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.1e-75 286.6 209 70.3
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 6.1e-75 285.0 209 69.4
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 2.1e-67 260.0 199 67.8
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.7e-67 258.8 221 62.9
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.0e-61 241.1 246 52.8
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.5e-60 237.3 290 45.2
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.2e-59 234.2 239 57.7
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.8e-56 223.0 242 53.7
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 6.8e-50 201.8 154 70.8
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 6.8e-42 175.3 297 36.7
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 3.3e-36 156.4 101 75.2
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.3e-36 156.0 288 34.7
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.6e-30 136.0 148 50.0
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.3e-28 129.8 84 75.0
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 2.1e-27 127.1 121 57.9
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 2.9e-24 116.7 176 46.0
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 5.4e-23 112.5 63 85.7
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 1.2e-22 111.3 244 29.1
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 1.7e-21 107.5 62 83.9
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.2e-19 101.3 84 60.7
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.2e-17 94.7 145 37.9
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 1.3e-16 91.3 121 45.5
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 3.7e-16 89.7 84 59.5
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.4e-10 70.5 78 55.1
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 7.6e-09 65.5 144 35.4
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 3.2e-07 60.1 80 46.2
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 1.6e-06 57.8 63 54.0
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 6.0e-06 55.8 63 49.2


User provided reference genes

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