Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 5.6e-60 234.2 128 100.0
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 1.4e-55 219.5 127 93.7
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 1.2e-54 216.5 128 90.6
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 2.1e-54 215.7 128 90.6
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 4.6e-54 214.5 128 89.1
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 1.0e-53 213.4 128 89.8
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.8e-53 212.6 127 89.0
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 3.0e-53 211.8 127 89.8
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 5.1e-53 211.1 127 89.8
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 5.1e-53 211.1 127 89.8
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 6.7e-53 210.7 127 88.2
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 6.7e-53 210.7 127 89.8
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 8.7e-53 210.3 126 88.9
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 8.7e-53 210.3 127 89.0
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.5e-52 209.5 127 89.0
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.9e-52 209.1 127 88.2
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 1.9e-52 209.1 127 87.4
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 2.5e-52 208.8 127 89.0
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 3.3e-52 208.4 127 87.4
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 3.3e-52 208.4 127 87.4
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 3.3e-52 208.4 124 93.5
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 3.3e-52 208.4 125 88.0
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 3.3e-52 208.4 141 83.0
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 4.3e-52 208.0 127 87.4
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 4.3e-52 208.0 127 88.2
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 4.3e-52 208.0 128 85.9
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 4.3e-52 208.0 127 88.2
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 7.4e-52 207.2 127 88.2
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 9.6e-52 206.8 127 88.2
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 9.6e-52 206.8 126 88.1
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.3e-51 206.5 127 86.6
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 1.3e-51 206.5 125 87.2
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 1.3e-51 206.5 127 85.8
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 1.3e-51 206.5 125 87.2
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 1.3e-51 206.5 125 88.0
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 1.6e-51 206.1 128 85.9
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.1e-51 205.7 126 88.1
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 2.1e-51 205.7 125 87.2
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.8e-51 205.3 126 88.1
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.8e-51 205.3 126 88.1
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 2.8e-51 205.3 125 86.4
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 2.8e-51 205.3 126 87.3
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 2.8e-51 205.3 127 86.6
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 3.7e-51 204.9 127 85.0
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 3.7e-51 204.9 126 86.5
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 6.2e-51 204.1 125 86.4
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 6.2e-51 204.1 126 86.5
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 8.2e-51 203.8 126 87.3
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 1.8e-50 202.6 126 85.7
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 1.8e-50 202.6 125 85.6
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 1.8e-50 202.6 125 85.6
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.8e-50 202.6 127 85.0
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 2.4e-50 202.2 126 84.9
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 2.4e-50 202.2 126 84.9
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 2.4e-50 202.2 126 85.7
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 2.4e-50 202.2 127 84.3
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 3.1e-50 201.8 126 84.9
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 3.1e-50 201.8 127 87.4
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.1e-50 201.8 126 87.3
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 4.1e-50 201.4 125 84.8
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 6.9e-50 200.7 127 84.3
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 6.9e-50 200.7 125 84.8
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.2e-49 199.9 126 86.5
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 2.0e-49 199.1 127 82.7
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 1.3e-48 196.4 125 83.2
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.7e-48 196.1 126 85.7
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 2.2e-48 195.7 126 81.7
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 2.2e-48 195.7 126 81.7
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 2.2e-48 195.7 126 81.7
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 3.8e-48 194.9 144 77.1
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 6.5e-48 194.1 135 78.5
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 8.4e-48 193.7 126 81.0
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 8.4e-48 193.7 126 81.0
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 3.2e-47 191.8 126 81.7
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 5.5e-47 191.0 126 79.4
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 7.1e-47 190.7 121 81.8
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 2.1e-46 189.1 126 81.7
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 2.1e-46 189.1 127 80.3
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 7.9e-46 187.2 106 94.3
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 1.8e-45 186.0 130 80.0
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.3e-45 185.7 125 78.4
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 2.3e-45 185.7 108 88.9
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 3.9e-45 184.9 125 78.4
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 5.1e-45 184.5 182 61.5
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 6.7e-45 184.1 110 85.5
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 5.7e-44 181.0 110 84.5
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 7.4e-44 180.6 117 83.8
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 1.3e-43 179.9 105 89.5
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 1.3e-43 179.9 108 87.0
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 1.6e-43 179.5 107 88.8
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.8e-43 178.7 117 83.8
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 8.2e-43 177.2 108 85.2
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 1.4e-42 176.4 105 88.6
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 2.4e-42 175.6 105 89.5
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.4e-42 175.6 117 82.1
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 2.4e-42 175.6 105 90.5
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 2.4e-42 175.6 116 85.3
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 2.4e-42 175.6 126 74.6
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 3.1e-42 175.3 124 76.6
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 5.9e-41 171.0 123 77.2
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 7.7e-41 170.6 105 85.7
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.0e-40 170.2 116 78.4
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 2.2e-40 169.1 115 79.1
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 2.9e-40 168.7 108 80.6
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 2.9e-40 168.7 121 76.9
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 3.8e-40 168.3 104 84.6
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 1.1e-39 166.8 121 76.0
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 4.2e-39 164.9 108 79.6
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 6.1e-38 161.0 125 69.6
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 3.0e-37 158.7 115 75.7
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 3.9e-37 158.3 127 65.4
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 6.7e-37 157.5 123 65.9
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 1.1e-36 156.8 157 59.2
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 1.5e-36 156.4 87 93.1
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 2.0e-36 156.0 93 88.2
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 4.3e-36 154.8 87 93.1
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 4.3e-36 154.8 88 90.9
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 5.7e-36 154.5 88 89.8
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 1.7e-35 152.9 128 68.8
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 8.2e-35 150.6 93 83.9
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 1.1e-34 150.2 88 86.4
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 1.8e-34 149.4 107 71.0
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 3.1e-34 148.7 84 89.3
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 1.5e-33 146.4 134 63.4
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 3.4e-33 145.2 86 87.2
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 7.7e-33 144.1 88 85.2
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 7.7e-33 144.1 88 88.6
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 1.0e-32 143.7 89 83.1
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 2.9e-32 142.1 87 87.4
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 2.5e-31 139.0 126 66.7
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 9.4e-31 137.1 103 73.8
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.4e-29 133.3 95 80.0
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 2.3e-29 132.5 87 79.3
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 1.3e-27 126.7 71 91.5
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 9.1e-26 120.6 65 93.8
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 9.1e-26 120.6 65 93.8
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.0e-25 119.4 88 73.9
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 2.5e-23 112.5 77 79.2
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 5.5e-23 111.3 63 92.1
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 3.6e-22 108.6 61 91.8
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 3.0e-21 105.5 121 47.9
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 3.3e-20 102.1 122 43.4
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 2.8e-19 99.0 66 77.3
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 2.8e-19 99.0 67 74.6
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 4.8e-19 98.2 64 78.1
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.4e-18 96.7 64 76.6
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 3.1e-18 95.5 106 56.6
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 3.1e-18 95.5 74 68.9
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 9.1e-18 94.0 65 75.4
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 1.0e-16 90.5 65 72.3
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 5.5e-15 84.7 118 38.1
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 2.7e-14 82.4 51 84.3
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 2.8e-11 72.4 123 34.1
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 5.4e-10 68.2 122 38.5
arahy.Tifrunner.gnm1.ann1.MPJ1GQ Arachis hypogaea HOM05D004997 ORTHO05D005921 9.4e-07 57.4 51 62.7


User provided reference genes

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