Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 8.3e-95 350.9 257 100.0
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 2.9e-15 86.7 152 46.7
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 8.8e-12 75.1 153 37.3
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 1.1e-11 74.7 246 30.1
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 3.3e-11 73.2 138 41.3
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 4.4e-11 72.8 83 48.2
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 9.7e-11 71.6 95 49.5
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 9.7e-11 71.6 77 50.6
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 1.7e-10 70.9 111 45.9
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 1.7e-10 70.9 111 45.9
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.7e-10 70.9 103 47.6
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.7e-10 70.9 75 52.0
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 2.2e-10 70.5 84 48.8
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 2.8e-10 70.1 108 42.6
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 6.3e-10 68.9 111 40.5
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 6.3e-10 68.9 80 52.5
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 8.2e-10 68.6 88 46.6
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 1.1e-09 68.2 83 45.8
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 1.4e-09 67.8 155 37.4
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 1.4e-09 67.8 134 38.1
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 1.4e-09 67.8 70 55.7
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.4e-09 67.8 74 54.1
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.8e-09 67.4 81 48.1
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.8e-09 67.4 186 33.3
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 1.8e-09 67.4 152 40.1
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.8e-09 67.4 64 59.4
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.8e-09 67.4 64 59.4
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 2.4e-09 67.0 74 51.4
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 2.4e-09 67.0 83 48.2
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 2.4e-09 67.0 114 40.4
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 3.1e-09 66.6 73 53.4
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 3.1e-09 66.6 79 46.8
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 4.1e-09 66.2 110 42.7
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 5.3e-09 65.9 115 44.3
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 7.0e-09 65.5 123 43.9
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 7.0e-09 65.5 129 38.8
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 7.0e-09 65.5 74 51.4
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 7.0e-09 65.5 80 46.2
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 9.1e-09 65.1 80 46.2
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 9.1e-09 65.1 80 46.2
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 9.1e-09 65.1 147 39.5
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.2e-08 64.7 59 59.3
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 1.2e-08 64.7 117 41.0
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.6e-08 64.3 110 39.1
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 2.0e-08 63.9 91 45.1
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 2.0e-08 63.9 97 44.3
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 2.6e-08 63.5 66 51.5
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 2.6e-08 63.5 113 41.6
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 3.5e-08 63.2 104 41.3
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 4.5e-08 62.8 112 39.3
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 7.7e-08 62.0 111 38.7
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 7.7e-08 62.0 111 40.5
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.0e-07 61.6 167 34.1
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 1.0e-07 61.6 117 42.7
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 2.2e-07 60.5 100 44.0
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 2.9e-07 60.1 116 38.8
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 2.9e-07 60.1 80 47.5
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 2.9e-07 60.1 139 37.4
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 3.8e-07 59.7 90 45.6
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 6.5e-07 58.9 124 33.9
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 8.5e-07 58.5 114 41.2
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 8.5e-07 58.5 124 36.3
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 8.5e-07 58.5 149 36.9
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 8.5e-07 58.5 41 65.9
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.1e-06 58.2 102 40.2
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 2.5e-06 57.0 83 41.0
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 3.2e-06 56.6 116 37.1
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 4.2e-06 56.2 105 40.0
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 5.5e-06 55.8 140 35.7
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 5.5e-06 55.8 148 35.8
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 7.2e-06 55.5 68 50.0
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 9.4e-06 55.1 110 42.7
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 9.4e-06 55.1 110 37.3


User provided reference genes

Program Settings