Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 4.4e-172 607.8 303 100.0
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 3.9e-160 568.2 316 92.7
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 4.8e-150 534.6 295 92.5
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 7.7e-124 447.6 315 73.7
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 5.7e-119 431.4 259 86.1
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 4.0e-104 382.1 259 74.1
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 6.8e-104 381.3 309 62.1
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.5e-103 380.2 302 63.9
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 1.3e-102 377.1 317 60.6
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 6.3e-102 374.8 311 61.7
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 7.0e-101 371.3 311 59.8
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 2.7e-100 369.4 307 60.3
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 3.5e-100 369.0 307 61.6
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 3.5e-100 369.0 304 62.5
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 5.9e-100 368.2 314 59.6
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 1.7e-99 366.7 311 62.1
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 2.3e-99 366.3 304 62.5
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 2.3e-99 366.3 311 62.1
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 8.6e-99 364.4 304 61.5
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-98 364.0 211 88.2
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 1.1e-98 364.0 309 62.5
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 5.5e-98 361.7 307 58.6
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 5.5e-98 361.7 316 59.8
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 1.2e-97 360.5 309 61.2
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 2.8e-97 359.4 307 58.6
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 2.8e-97 359.4 306 57.8
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 3.6e-97 359.0 305 59.3
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 4.7e-97 358.6 294 59.9
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 1.0e-96 357.5 303 59.4
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 4.0e-96 355.5 304 60.9
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 4.4e-95 352.1 307 57.0
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 5.7e-95 351.7 309 58.9
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 7.5e-95 351.3 304 58.9
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 9.8e-95 350.9 306 55.9
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.7e-94 350.1 309 57.6
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 3.7e-94 349.0 305 57.0
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 3.7e-94 349.0 303 60.4
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 6.3e-94 348.2 307 58.6
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 1.1e-93 347.4 307 59.0
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 1.1e-93 347.4 314 54.8
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.4e-93 347.1 307 56.4
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.1e-93 345.9 307 57.7
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 4.1e-93 345.5 328 56.4
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 3.5e-92 342.4 307 54.7
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 5.9e-92 341.7 307 56.0
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 5.9e-92 341.7 308 57.8
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 1.0e-91 340.9 305 58.4
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 1.3e-91 340.5 294 57.1
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 2.3e-91 339.7 302 56.3
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 8.6e-91 337.8 310 55.5
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 8.6e-91 337.8 307 53.1
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 1.5e-90 337.0 323 54.5
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 2.5e-90 336.3 305 56.7
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 2.5e-90 336.3 314 51.9
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 3.3e-90 335.9 305 57.0
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 5.6e-90 335.1 314 51.9
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 9.5e-90 334.3 307 56.4
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 1.6e-89 333.6 309 54.0
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 2.8e-89 332.8 308 56.5
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 3.6e-89 332.4 304 55.6
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 1.8e-88 330.1 305 56.7
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 2.3e-88 329.7 301 57.5
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 2.3e-88 329.7 302 57.0
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 5.2e-88 328.6 310 55.5
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 4.4e-87 325.5 288 58.7
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 5.7e-87 325.1 310 54.8
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 5.7e-87 325.1 310 54.8
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 7.5e-87 324.7 305 53.4
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 1.4e-85 320.5 308 54.5
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 1.8e-85 320.1 308 54.2
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 1.8e-85 320.1 311 55.0
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.6e-84 317.0 208 82.2
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 1.5e-82 310.5 298 53.7
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.3e-82 308.9 305 53.4
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 5.6e-82 308.5 305 52.5
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 9.5e-82 307.8 304 57.6
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 1.2e-81 307.4 261 60.5
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.1e-81 306.6 302 53.6
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 8.0e-81 304.7 302 53.3
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 1.4e-80 303.9 297 51.9
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 4.4e-79 298.9 273 57.5
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 2.4e-77 293.1 259 60.6
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 3.2e-77 292.7 328 53.0
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 5.4e-77 292.0 314 49.7
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 1.2e-76 290.8 300 51.3
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 1.2e-76 290.8 308 52.6
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.9e-74 283.5 266 55.6
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 2.1e-73 280.0 262 54.6
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 1.4e-72 277.3 262 55.3
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 6.8e-72 275.0 231 60.2
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 1.5e-71 273.9 316 46.8
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.1e-69 265.8 261 55.2
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 4.1e-69 265.8 237 57.0
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 2.8e-65 253.1 224 60.7
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 3.6e-65 252.7 284 51.1
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 1.4e-64 250.8 246 52.4
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 2.4e-61 240.0 220 56.4
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 7.8e-60 235.0 291 47.8
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 1.3e-59 234.2 217 56.2
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 7.3e-58 228.4 298 43.0
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 2.1e-57 226.9 305 41.0
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.2e-53 213.0 178 61.8
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 6.6e-51 205.3 289 41.5
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 7.3e-50 201.8 151 72.8
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 3.1e-48 196.4 312 36.2
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 2.4e-45 186.8 183 55.2
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.6e-44 184.1 290 36.6
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 6.0e-44 182.2 232 41.8
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 9.0e-40 168.3 155 56.8
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 3.4e-39 166.4 115 64.3
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 1.6e-36 157.5 172 47.7
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 2.3e-35 153.7 105 68.6
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 1.9e-34 150.6 89 83.1
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 9.6e-34 148.3 162 49.4
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 5.8e-31 139.0 252 38.1
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 1.7e-30 137.5 163 47.2
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 4.2e-29 132.9 318 28.6
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 4.8e-25 119.4 153 43.8
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 3.4e-23 113.2 242 38.0
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 5.0e-22 109.4 161 39.8
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 6.5e-22 109.0 75 65.3
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 9.4e-21 105.1 177 38.4
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 1.6e-20 104.4 145 41.4
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 6.1e-20 102.4 116 50.9
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.9e-18 97.4 74 62.2
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 5.7e-18 95.9 74 60.8
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.0e-15 87.4 180 34.4
HanXRQChr01g0029231 Helianthus annuus HOM05D005679 ORTHO05D007228 3.2e-13 80.1 198 37.4
HanXRQChr10g0314001 Helianthus annuus HOM05D005679 ORTHO05D007228 5.5e-13 79.3 120 42.5
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 5.1e-11 72.8 143 35.0
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.1e-10 71.6 70 45.7
HanXRQChr13g0424671 Helianthus annuus HOM05D005679 ORTHO05D007228 5.3e-08 62.8 113 37.2
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 1.2e-07 61.6 61 55.7


User provided reference genes

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