Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.4e-170 602.8 291 100.0
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.3e-141 506.5 295 83.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 8.1e-139 497.3 272 87.1
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 4.2e-119 431.8 292 68.8
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.1e-116 423.7 287 67.9
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 7.4e-116 421.0 294 70.1
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 1.2e-113 413.7 285 68.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.4e-113 412.1 286 69.2
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 1.4e-111 406.8 284 67.6
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 4.6e-110 401.7 288 67.7
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 9.7e-108 394.0 282 64.5
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 1.3e-107 393.7 293 63.8
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.7e-107 393.3 287 66.6
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.2e-107 392.9 288 65.6
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 3.7e-107 392.1 286 65.7
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.8e-107 391.7 288 65.6
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 6.3e-107 391.3 288 64.6
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.1e-106 390.6 290 64.5
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.8e-106 389.8 299 62.5
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.1e-106 389.0 288 65.3
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 3.1e-106 389.0 278 63.3
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.1e-106 388.7 271 64.2
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 6.9e-106 387.9 289 63.0
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 9.1e-106 387.5 282 62.4
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.2e-105 387.1 278 65.5
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.5e-105 386.7 290 62.4
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.5e-105 386.7 273 63.0
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 2.6e-105 386.0 279 67.0
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 3.4e-105 385.6 275 65.5
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.4e-105 385.6 285 66.0
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 7.7e-105 384.4 291 64.9
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 2.9e-104 382.5 269 66.9
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 3.8e-104 382.1 286 64.3
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 3.8e-104 382.1 278 62.9
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 5.0e-104 381.7 284 63.4
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 8.5e-104 380.9 255 68.2
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 8.5e-104 380.9 285 64.2
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.4e-103 380.2 288 64.2
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 2.5e-103 379.4 271 65.3
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 3.2e-103 379.0 288 63.5
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 7.2e-103 377.9 287 63.4
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.2e-102 377.1 288 63.2
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.2e-102 377.1 295 63.4
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.6e-102 376.7 285 62.8
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.6e-102 376.7 289 62.6
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.6e-102 376.7 288 62.8
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.1e-102 376.3 274 65.7
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 2.7e-102 375.9 266 66.2
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 7.9e-102 374.4 287 63.1
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.0e-101 374.0 269 64.3
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.4e-101 373.6 294 64.3
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 3.0e-101 372.5 288 61.8
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 3.0e-101 372.5 269 64.7
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 5.1e-101 371.7 289 62.3
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.1e-100 370.5 288 62.5
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.5e-100 370.2 293 58.0
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.3e-100 369.0 290 61.4
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 3.3e-100 369.0 284 63.0
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.7e-99 366.7 270 63.7
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.7e-99 366.7 293 61.4
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 6.3e-99 364.8 279 62.4
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.8e-98 363.2 231 72.3
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 4.1e-98 362.1 281 61.9
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 5.3e-98 361.7 263 65.4
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 9.1e-98 360.9 270 63.3
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.5e-97 360.1 255 64.7
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 2.6e-97 359.4 281 61.6
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 5.9e-97 358.2 289 60.6
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 7.7e-97 357.8 285 61.8
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 5.0e-96 355.1 273 62.6
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 8.5e-96 354.4 297 58.9
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 8.5e-96 354.4 274 63.1
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.1e-95 354.0 313 57.2
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.4e-95 353.6 260 65.8
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 1.9e-95 353.2 284 60.6
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 5.5e-95 351.7 235 68.1
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.6e-94 350.1 284 60.2
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 4.7e-94 348.6 252 63.5
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 2.6e-92 342.8 298 58.1
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 2.8e-91 339.3 278 57.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.1e-90 337.4 279 55.2
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 4.1e-90 335.5 291 58.4
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 4.1e-90 335.5 263 60.1
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.2e-89 334.0 281 56.9
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.6e-89 333.6 287 57.1
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.7e-88 330.1 266 57.5
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 8.0e-86 321.2 279 55.9
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.0e-85 320.9 267 56.2
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 1.4e-85 320.5 279 57.7
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.8e-85 320.1 251 62.2
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 5.2e-77 292.0 266 50.4
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 8.8e-77 291.2 232 58.6
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.4e-74 283.9 289 49.1
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.8e-74 283.5 276 50.7
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.1e-74 282.7 279 49.8
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-74 282.0 289 49.8
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 5.4e-74 282.0 289 49.8
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 3.5e-73 279.3 290 49.0
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 4.5e-73 278.9 290 49.0
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 5.9e-73 278.5 247 51.4
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 7.7e-73 278.1 278 50.4
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 7.7e-73 278.1 296 49.7
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.0e-72 277.7 276 50.7
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 3.8e-72 275.8 278 49.6
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.8e-72 275.8 256 52.3
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 1.9e-71 273.5 293 48.5
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.9e-71 273.5 292 48.3
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.5e-71 271.9 297 49.2
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-70 269.6 248 53.6
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 2.3e-69 266.5 267 48.7
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.0e-69 265.8 289 48.8
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 2.2e-67 260.0 277 47.7
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 6.6e-64 248.4 218 57.8
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 3.3e-63 246.1 290 49.3
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 4.4e-60 235.7 254 45.3
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 2.2e-51 206.8 276 40.6
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.4e-50 203.4 237 44.3
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.4e-50 202.2 238 41.6
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 7.8e-49 198.4 221 47.1
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.9e-48 196.1 201 46.3
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 8.6e-48 194.9 278 37.4
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 2.2e-43 180.3 282 41.8
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 4.1e-42 176.0 180 49.4
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 6.0e-41 172.2 194 47.9
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 7.8e-41 171.8 184 48.9
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 5.1e-40 169.1 181 50.3
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 3.3e-39 166.4 194 47.9
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 3.3e-39 166.4 242 42.1
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.8e-38 163.3 241 41.1
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-35 154.1 251 39.4
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 7.1e-34 148.7 199 42.7
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-33 147.5 201 42.8
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 2.1e-33 147.1 201 43.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 4.6e-33 146.0 143 51.0
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 4.6e-33 146.0 201 42.3
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.3e-31 138.7 140 47.9
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 8.1e-30 135.2 143 49.7
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 3.1e-29 133.3 85 65.9
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 4.9e-27 125.9 194 40.7
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 4.9e-27 125.9 194 40.7
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 8.7e-24 115.2 172 40.7
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.5e-20 104.4 185 31.9
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 9.3e-18 95.1 93 50.5
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 4.6e-17 92.8 66 63.6
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 4.6e-17 92.8 66 63.6
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 5.6e-15 85.9 118 42.4
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 7.4e-15 85.5 69 56.5
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.8e-13 80.9 95 42.1


User provided reference genes

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