Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0339351 Helianthus annuus HOM05D000658 ORTHO05D022834 2.6e-68 261.9 132 100.0
HanXRQChr13g0389261 Helianthus annuus HOM05D000658 ORTHO05D000826 1.4e-16 90.1 59 79.7
ECA240G3050 Erigeron canadensis HOM05D000658 ORTHO05D000826 1.3e-14 83.6 55 78.2
Lsat_1_v5_gn_9_98681 Lactuca sativa HOM05D000658 ORTHO05D000826 1.7e-11 73.2 56 67.9
Peaxi162Scf00027g00165 Petunia axillaris HOM05D000658 ORTHO05D000826 6.5e-11 71.2 41 78.0
Lsat_1_v5_gn_5_127621 Lactuca sativa HOM05D000658 ORTHO05D000826 1.9e-10 69.7 57 61.4
CAN.G1119.18 Capsicum annuum HOM05D000658 ORTHO05D000826 3.2e-10 68.9 54 64.8
Lj1C838T10 Lonicera japonica HOM05D000658 ORTHO05D000826 9.4e-10 67.4 55 67.3
Solyc10g007110.3 Solanum lycopersicum HOM05D000658 ORTHO05D000826 1.2e-09 67.0 53 64.2
Sopen10g003010 Solanum pennellii HOM05D000658 ORTHO05D000826 1.2e-09 67.0 53 64.2
HanXRQChr10g0302531 Helianthus annuus HOM05D000658 ORTHO05D000826 2.1e-09 66.2 52 67.3
PGSC0003DMG400021276 Solanum tuberosum HOM05D000658 ORTHO05D000826 2.7e-09 65.9 53 64.2
vmacro09521 Vaccinium macrocarpon HOM05D000658 ORTHO05D000826 2.7e-09 65.9 41 78.0
DCAR_017122 Daucus carota HOM05D000658 ORTHO05D000826 4.7e-09 65.1 38 78.9
Lsat_1_v5_gn_8_137421 Lactuca sativa HOM05D000658 ORTHO05D000826 8.0e-09 64.3 44 63.6
Actinidia18777 Actinidia chinensis HOM05D000658 ORTHO05D000826 1.0e-08 63.9 41 70.7
Dinv20206 Davidia involucrata HOM05D000658 ORTHO05D000826 1.0e-08 63.9 41 75.6
ECA234G4355 Erigeron canadensis HOM05D000658 ORTHO05D000826 1.0e-08 63.9 51 66.7
Oeu025361.1 Olea europaea HOM05D000658 ORTHO05D000826 1.0e-08 63.9 40 77.5
Lsat_1_v5_gn_8_20721 Lactuca sativa HOM05D003172 ORTHO05D022834 1.4e-08 63.5 45 62.2
HanXRQChr03g0074781 Helianthus annuus HOM05D000140 ORTHO05D000087 2.3e-08 62.8 63 60.3
Nn8g39650 Nelumbo nucifera HOM05D000658 ORTHO05D000826 3.0e-08 62.4 39 74.4
Dinv14940 Davidia involucrata HOM05D000658 ORTHO05D000826 6.7e-08 61.2 41 73.2
Actinidia39324 Actinidia chinensis HOM05D000658 ORTHO05D000826 8.8e-08 60.8 39 74.4
Sabra16G0259400 Salix brachista HOM05D000658 ORTHO05D000826 8.8e-08 60.8 36 77.8
Actinidia11097 Actinidia chinensis HOM05D000658 ORTHO05D000826 1.2e-07 60.5 39 71.8
GSVIVG01014286001 Vitis vinifera HOM05D000658 ORTHO05D000826 1.2e-07 60.5 42 66.7
Cc05_g11710 Coffea canephora HOM05D000658 ORTHO05D000826 1.5e-07 60.1 41 68.3
RcHm_v2.0_Chr2g0127461 Rosa chinensis HOM05D000658 ORTHO05D000826 1.5e-07 60.1 39 69.2
Hund02238 Selenicereus undatus HOM05D000658 ORTHO05D000826 1.5e-07 60.1 38 65.8
Eucgr.A01840 Eucalyptus grandis HOM05D000658 ORTHO05D000826 2.0e-07 59.7 44 61.4
CSS0037406 Camellia sinensis var. sinensis HOM05D000658 ORTHO05D000826 2.6e-07 59.3 39 69.2
CANSAT35G1277 Cannabis sativa HOM05D000658 ORTHO05D000826 2.6e-07 59.3 38 71.1
Ciclev10015303m.g Citrus clementina HOM05D000658 ORTHO05D000826 2.6e-07 59.3 39 64.1
MD03G1234800 Malus domestica HOM05D000658 ORTHO05D000826 2.6e-07 59.3 38 68.4
Migut.M00778 Erythranthe guttata HOM05D000658 ORTHO05D000826 3.3e-07 58.9 36 77.8
PGR042G1054 Punica granatum HOM05D000658 ORTHO05D000826 3.3e-07 58.9 39 66.7
QL02p059695 Quercus lobata HOM05D000658 ORTHO05D000826 3.3e-07 58.9 53 54.7
Solyc10g008200.4 Solanum lycopersicum HOM05D000658 ORTHO05D000826 3.3e-07 58.9 36 72.2
Hma1.2p1_0313F.1_g121730 Hydrangea macrophylla HOM05D000658 ORTHO05D000826 4.4e-07 58.5 39 69.2
Lj8C108G16 Lonicera japonica HOM05D000658 ORTHO05D000826 4.4e-07 58.5 52 55.8
Medtr8g061360 Medicago truncatula HOM05D000658 ORTHO05D000826 4.4e-07 58.5 39 61.5
Rhsim04G0022700 Rhododendron simsii HOM05D000658 ORTHO05D000826 4.4e-07 58.5 41 68.3
CSS0042615 Camellia sinensis var. sinensis HOM05D000658 ORTHO05D000826 5.7e-07 58.2 39 69.2
CSS0045477 Camellia sinensis var. sinensis HOM05D000658 ORTHO05D000826 5.7e-07 58.2 39 69.2
Dinv10159 Davidia involucrata HOM05D000658 ORTHO05D000826 5.7e-07 58.2 39 69.2
Dinv10161 Davidia involucrata HOM05D000658 ORTHO05D000826 5.7e-07 58.2 39 66.7
Sabra11G0101000 Salix brachista HOM05D000658 ORTHO05D000826 5.7e-07 58.2 42 66.7
SGA_v2.0_scaffold73G24229 Striga asiatica HOM05D000658 ORTHO05D000826 5.7e-07 58.2 36 75.0
TWI59G0739 Tripterygium wilfordii HOM05D000658 ORTHO05D000826 5.7e-07 58.2 39 64.1
Lj1C712T2 Lonicera japonica HOM05D000658 ORTHO05D000826 7.5e-07 57.8 79 44.3
Peaxi162Scf00845g00027 Petunia axillaris HOM05D000658 ORTHO05D000826 7.5e-07 57.8 52 55.8
Solyc12g096240.3 Solanum lycopersicum HOM05D000658 ORTHO05D000826 7.5e-07 57.8 40 67.5
Sopen12g032100 Solanum pennellii HOM05D000658 ORTHO05D000826 7.5e-07 57.8 40 67.5
TWI59G0836 Tripterygium wilfordii HOM05D000658 ORTHO05D000826 7.5e-07 57.8 38 68.4
TAR626G0287 Trochodendron aralioides HOM05D000658 ORTHO05D000826 7.5e-07 57.8 39 69.2
CAN.G947.22 Capsicum annuum HOM05D000658 ORTHO05D000826 9.7e-07 57.4 49 61.2
DCAR_000587 Daucus carota HOM05D000658 ORTHO05D000826 9.7e-07 57.4 39 66.7
Duzib052G1179 Durio zibethinus HOM05D000658 ORTHO05D000826 9.7e-07 57.4 38 68.4
FAN11G0086 Fragaria x ananassa HOM05D000658 ORTHO05D000826 9.7e-07 57.4 38 68.4
FAN16G2013 Fragaria x ananassa HOM05D000658 ORTHO05D000826 9.7e-07 57.4 38 68.4
FAN21G0951 Fragaria x ananassa HOM05D000658 ORTHO05D000826 9.7e-07 57.4 38 68.4
Manes.12G089300 Manihot esculenta HOM05D000658 ORTHO05D000826 9.7e-07 57.4 39 69.2
PGR042G2522 Punica granatum HOM05D000658 ORTHO05D000826 9.7e-07 57.4 122 32.0
TPR.G28173 Trifolium pratense HOM05D000658 ORTHO05D000826 9.7e-07 57.4 39 61.5
Actinidia30459 Actinidia chinensis HOM05D000658 ORTHO05D000826 1.3e-06 57.0 39 66.7
Haze_13222 Corylus avellana HOM05D000658 ORTHO05D000826 1.3e-06 57.0 36 72.2
HanXRQChr17g0555781 Helianthus annuus HOM05D000658 ORTHO05D000826 1.3e-06 57.0 38 65.8
Manes.03G105500 Manihot esculenta HOM05D000658 ORTHO05D000826 1.3e-06 57.0 36 72.2
Peaxi162Scf00876g10023 Petunia axillaris HOM05D000658 ORTHO05D000826 1.3e-06 57.0 49 61.2
PGR083G0227 Punica granatum HOM05D000658 ORTHO05D000826 1.3e-06 57.0 49 55.1
arahy.Tifrunner.gnm1.ann1.J1Z9L2 Arachis hypogaea HOM05D000658 ORTHO05D000826 1.7e-06 56.6 49 53.1
CSS0028146 Camellia sinensis var. sinensis HOM05D000658 ORTHO05D000826 1.7e-06 56.6 39 61.5
CAN.G1104.3 Capsicum annuum HOM05D000658 ORTHO05D000826 1.7e-06 56.6 49 61.2
DCAR_013030 Daucus carota HOM05D000658 ORTHO05D000826 1.7e-06 56.6 39 61.5
Duzib052G0875 Durio zibethinus HOM05D000658 ORTHO05D000826 1.7e-06 56.6 39 66.7
Gohir.D13G152212 Gossypium hirsutum HOM05D000658 ORTHO05D000826 1.7e-06 56.6 36 72.2
HanXRQChr07g0198821 Helianthus annuus HOM05D001214 ORTHO05D001029 1.7e-06 56.6 29 96.6
HanXRQChr07g0198831 Helianthus annuus HOM05D001214 ORTHO05D001029 1.7e-06 56.6 30 90.0
Manes.04G087200 Manihot esculenta HOM05D000658 ORTHO05D000826 1.7e-06 56.6 39 66.7
Peaxi162Scf00059g00920 Petunia axillaris HOM05D000658 ORTHO05D000826 1.7e-06 56.6 36 66.7
SalBow7G3431 Salvia bowleyana HOM05D000658 ORTHO05D000826 1.7e-06 56.6 37 67.6
PGSC0003DMG400002037 Solanum tuberosum HOM05D000658 ORTHO05D000826 1.7e-06 56.6 36 72.2
Aa31LG8G17510 Aethionema arabicum HOM05D000658 ORTHO05D000826 2.2e-06 56.2 90 36.7
Cpa.g.sc131.89 Carica papaya HOM05D000658 ORTHO05D000826 2.2e-06 56.2 36 69.4
Duzib052G1251 Durio zibethinus HOM05D000658 ORTHO05D000826 2.2e-06 56.2 39 69.2
Duzib213G0107 Durio zibethinus HOM05D000658 ORTHO05D000826 2.2e-06 56.2 74 44.6
ECA233G1890 Erigeron canadensis HOM05D000658 ORTHO05D000826 2.2e-06 56.2 38 65.8
FvH4_6g26610 Fragaria vesca HOM05D000658 ORTHO05D000826 2.2e-06 56.2 41 63.4
FAN02G3520 Fragaria x ananassa HOM05D000658 ORTHO05D000826 2.2e-06 56.2 41 63.4
FAN05G1185 Fragaria x ananassa HOM05D000658 ORTHO05D000826 2.2e-06 56.2 41 63.4
FAN09G0523 Fragaria x ananassa HOM05D000658 ORTHO05D000826 2.2e-06 56.2 41 63.4
FAN14G4433 Fragaria x ananassa HOM05D000658 ORTHO05D000826 2.2e-06 56.2 41 63.4
Nn1g04210 Nelumbo nucifera HOM05D000658 ORTHO05D000826 2.2e-06 56.2 39 61.5
Nitab4.5_0004959g0050 Nicotiana tabacum HOM05D000658 ORTHO05D000826 2.2e-06 56.2 36 69.4
Sc21g0003140 Simmondsia chinensis HOM05D000658 ORTHO05D000826 2.2e-06 56.2 36 66.7
THA.LOC104824693 Tarenaya hassleriana HOM05D000658 ORTHO05D000826 2.2e-06 56.2 38 65.8
TAR627G0701 Trochodendron aralioides HOM05D000658 ORTHO05D000826 2.2e-06 56.2 38 68.4
Atru.chr6.2882 Acer truncatum HOM05D000658 ORTHO05D000826 2.8e-06 55.8 39 61.5
Ah.06g184710 Amaranthus hybridus HOM05D000658 ORTHO05D000826 2.8e-06 55.8 38 57.9
MSTRG.15134 Avicennia marina HOM05D000658 ORTHO05D000826 2.8e-06 55.8 39 61.5
ClCG11G017780 Citrullus lanatus HOM05D000658 ORTHO05D000826 2.8e-06 55.8 36 69.4
Ciclev10015358m.g Citrus clementina HOM05D000658 ORTHO05D000826 2.8e-06 55.8 39 61.5
Migut.M00158 Erythranthe guttata HOM05D000658 ORTHO05D000826 2.8e-06 55.8 39 64.1
Nn1g06437 Nelumbo nucifera HOM05D000658 ORTHO05D000826 2.8e-06 55.8 36 66.7
Nitab4.5_0003076g0090 Nicotiana tabacum HOM05D000658 ORTHO05D000826 2.8e-06 55.8 39 64.1
Thecc.02G184200 Theobroma cacao HOM05D000658 ORTHO05D000826 2.8e-06 55.8 39 66.7
MSTRG.6818 Avicennia marina HOM05D000658 ORTHO05D000826 3.7e-06 55.5 31 80.6
BraA02t06129Z Brassica rapa HOM05D000658 ORTHO05D000826 3.7e-06 55.5 43 55.8
CiPaw.04G127900 Carya illinoinensis HOM05D000658 ORTHO05D000826 3.7e-06 55.5 39 56.4
CiPaw.04G128200 Carya illinoinensis HOM05D000658 ORTHO05D000826 3.7e-06 55.5 39 56.4
AUR62019479 Chenopodium quinoa HOM05D000658 ORTHO05D000826 3.7e-06 55.5 38 60.5
Ca_07347_v3 Cicer arietinum L. HOM05D000658 ORTHO05D000826 3.7e-06 55.5 39 61.5
Ca_29607_v3 Cicer arietinum L. HOM05D000658 ORTHO05D000826 3.7e-06 55.5 39 61.5
Gohir.A13G147200 Gossypium hirsutum HOM05D000658 ORTHO05D000826 3.7e-06 55.5 36 69.4
Gorai.013G171600 Gossypium raimondii HOM05D000658 ORTHO05D000826 3.7e-06 55.5 36 69.4
MD11G1255300 Malus domestica HOM05D000658 ORTHO05D000826 3.7e-06 55.5 38 63.2
Rhsim04G0070700 Rhododendron simsii HOM05D000658 ORTHO05D000826 3.7e-06 55.5 39 64.1
GSVIVG01020588001 Vitis vinifera HOM05D000658 ORTHO05D000826 3.7e-06 55.5 39 61.5
AUR62036156 Chenopodium quinoa HOM05D000658 ORTHO05D000826 4.8e-06 55.1 38 57.9
Ciclev10008448m.g Citrus clementina HOM05D000658 ORTHO05D000826 4.8e-06 55.1 36 63.9
Haze_09407 Corylus avellana HOM05D000658 ORTHO05D000826 4.8e-06 55.1 97 39.2
MELO3C025613.2 Cucumis melo HOM05D000658 ORTHO05D000826 4.8e-06 55.1 36 69.4
CsaV3_4G033420 Cucumis sativus L. HOM05D000658 ORTHO05D000826 4.8e-06 55.1 36 69.4
Hma1.2p1_0625F.1_g191510 Hydrangea macrophylla HOM05D000658 ORTHO05D000826 4.8e-06 55.1 39 59.0
Nitab4.5_0006955g0020 Nicotiana tabacum HOM05D000658 ORTHO05D000826 4.8e-06 55.1 49 61.2
Psat4g136560 Pisum sativum HOM05D000658 ORTHO05D000826 4.8e-06 55.1 39 59.0
Sopen10g004060 Solanum pennellii HOM05D000658 ORTHO05D000826 4.8e-06 55.1 36 63.9
Thecc.07G097100 Theobroma cacao HOM05D000658 ORTHO05D000826 4.8e-06 55.1 36 69.4
arahy.Tifrunner.gnm1.ann1.5C9IB2 Arachis hypogaea HOM05D000658 ORTHO05D000826 6.3e-06 54.7 49 51.0
arahy.Tifrunner.gnm1.ann1.DLM7XC Arachis hypogaea HOM05D000658 ORTHO05D000826 6.3e-06 54.7 77 42.9
Ciclev10015356m.g Citrus clementina HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 64.1
COL.COLO4_18056 Corchorus olitorius HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 64.1
Gorai.005G200100 Gossypium raimondii HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 64.1
Lsat_1_v5_gn_8_134041 Lactuca sativa HOM05D000658 ORTHO05D000826 6.3e-06 54.7 38 63.2
MBI06_g06468_MAGBIO Magnolia biondii HOM05D000658 ORTHO05D000826 6.3e-06 54.7 40 62.5
MBI06_g06469_MAGBIO Magnolia biondii HOM05D000658 ORTHO05D000826 6.3e-06 54.7 105 39.0
Nn1g06440 Nelumbo nucifera HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 64.1
PSO675G5786 Papaver somniferum HOM05D000658 ORTHO05D000826 6.3e-06 54.7 44 52.3
Potri.017G013800 Populus trichocarpa HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 64.1
Potri.017G013900 Populus trichocarpa HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 64.1
Potri.017G014200 Populus trichocarpa HOM05D000658 ORTHO05D000826 6.3e-06 54.7 38 63.2
PGR042G0036 Punica granatum HOM05D000658 ORTHO05D000826 6.3e-06 54.7 122 31.1
QL08p039922 Quercus lobata HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 59.0
RcHm_v2.0_Chr5g0032401 Rosa chinensis HOM05D000658 ORTHO05D000826 6.3e-06 54.7 38 63.2
Sabra17G0011400 Salix brachista HOM05D000658 ORTHO05D000826 6.3e-06 54.7 38 63.2
THA.LOC104811878 Tarenaya hassleriana HOM05D000658 ORTHO05D000826 6.3e-06 54.7 36 69.4
Thecc.02G184800 Theobroma cacao HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 64.1
vmacro09251 Vaccinium macrocarpon HOM05D000658 ORTHO05D000826 6.3e-06 54.7 39 64.1
BcaB05g22097 Brassica carinata HOM05D000658 ORTHO05D000826 8.2e-06 54.3 53 52.8
BcaC03g14359 Brassica carinata HOM05D000658 ORTHO05D000826 8.2e-06 54.3 53 52.8
BolC2t07905H Brassica oleracea HOM05D000658 ORTHO05D000826 8.2e-06 54.3 53 52.8
Cc05_g07600 Coffea canephora HOM05D000658 ORTHO05D000826 8.2e-06 54.3 39 56.4
COL.COLO4_18018 Corchorus olitorius HOM05D000658 ORTHO05D000826 8.2e-06 54.3 36 69.4
COL.COLO4_18057 Corchorus olitorius HOM05D000658 ORTHO05D000826 8.2e-06 54.3 38 63.2
Lsat_1_v5_gn_8_134061 Lactuca sativa HOM05D000658 ORTHO05D000826 8.2e-06 54.3 39 59.0
SalBow7G0424 Salvia bowleyana HOM05D000658 ORTHO05D000826 8.2e-06 54.3 52 51.9
GSVIVG01020586001 Vitis vinifera HOM05D000658 ORTHO05D000826 8.2e-06 54.3 39 61.5


User provided reference genes

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