Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.4e-87 326.2 165 100.0
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.9e-44 183.0 175 61.1
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.6e-43 178.7 176 60.8
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.2e-30 137.1 182 48.9
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 5.4e-23 111.7 177 42.9
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 9.3e-23 110.9 169 44.4
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 2.7e-22 109.4 179 44.1
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.5e-22 109.0 177 44.1
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.5e-22 109.0 177 44.1
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 7.9e-22 107.8 181 43.6
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 3.9e-21 105.5 174 40.8
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 8.7e-21 104.4 188 41.0
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.1e-20 104.0 189 42.3
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.5e-20 102.8 181 42.0
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 4.3e-20 102.1 176 40.3
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 9.6e-20 100.9 181 41.4
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.3e-19 100.5 180 42.2
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.6e-19 100.1 191 39.8
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.6e-19 99.0 181 40.9
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 6.2e-19 98.2 173 41.0
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.8e-18 96.7 184 40.8
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 3.1e-18 95.9 177 43.5
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.3e-18 95.1 186 40.3
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 5.3e-18 95.1 171 43.9
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.9e-18 94.7 191 41.9
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 6.9e-18 94.7 193 38.9
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.5e-17 92.0 173 42.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 5.8e-17 91.7 187 39.0
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 7.6e-17 91.3 191 38.2
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 2.2e-16 89.7 169 40.2
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.9e-16 89.4 184 38.0
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.9e-16 89.4 180 36.7
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.9e-16 89.4 187 41.2
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.8e-16 89.0 182 39.6
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.9e-16 88.6 192 37.0
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 6.4e-16 88.2 177 41.2
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.4e-16 88.2 178 39.3
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.4e-16 88.2 187 38.5
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.4e-16 87.8 183 37.7
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 8.4e-16 87.8 182 39.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.1e-15 87.4 183 36.6
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.1e-15 87.4 186 34.9
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-15 86.7 183 39.9
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.9e-15 86.7 186 37.1
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.9e-15 86.7 179 37.4
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.9e-15 86.7 179 37.4
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 4.2e-15 85.5 187 39.6
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 4.2e-15 85.5 183 35.5
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 4.2e-15 85.5 193 39.4
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 7.1e-15 84.7 187 38.5
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.2e-14 84.0 184 35.9
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.1e-14 83.2 188 38.3
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 2.7e-14 82.8 171 36.3
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 3.5e-14 82.4 186 36.0
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 6.0e-14 81.6 186 40.3
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 6.0e-14 81.6 192 38.5
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 7.9e-14 81.3 182 36.3
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 7.9e-14 81.3 182 39.0
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.0e-13 80.9 184 37.0
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.0e-13 80.9 168 37.5
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.3e-13 80.5 178 38.2
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.8e-13 80.1 194 37.6
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.8e-13 80.1 177 37.9
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.3e-13 79.7 173 36.4
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 3.0e-13 79.3 183 35.0
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-13 79.3 182 36.8
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-13 79.3 150 38.7
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 3.9e-13 79.0 162 37.0
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.9e-13 79.0 187 38.5
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 5.1e-13 78.6 177 33.3
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 6.7e-13 78.2 176 33.5
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 8.7e-13 77.8 188 35.6
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 8.7e-13 77.8 161 35.4
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.9e-12 76.6 179 39.1
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 2.5e-12 76.3 191 36.1
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.5e-12 76.3 178 33.7
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.3e-12 75.9 191 37.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.3e-12 75.9 191 37.7
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 5.6e-12 75.1 185 34.6
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.6e-12 74.3 161 36.6
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.3e-11 73.9 180 35.6
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.3e-11 73.9 180 32.8
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.1e-11 73.2 193 35.2
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 2.1e-11 73.2 181 34.8
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.8e-11 72.8 189 37.6
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.8e-11 72.8 169 38.5
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.8e-11 72.8 181 33.1
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.8e-11 72.8 168 35.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.8e-11 72.0 151 35.8
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 4.8e-11 72.0 151 35.8
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 6.2e-11 71.6 183 31.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 6.2e-11 71.6 163 36.8
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 6.2e-11 71.6 162 38.3
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 6.2e-11 71.6 158 41.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 8.1e-11 71.2 168 34.5
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 8.1e-11 71.2 168 38.1
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.8e-10 70.1 186 36.6
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 2.4e-10 69.7 178 34.3
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 2.4e-10 69.7 178 34.3
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 4.0e-10 68.9 178 34.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 4.0e-10 68.9 178 34.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 5.3e-10 68.6 134 36.6
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 9.0e-10 67.8 135 38.5
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 9.0e-10 67.8 178 33.7
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.2e-09 67.4 190 35.3
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.2e-09 67.4 176 36.4
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 3.4e-09 65.9 173 34.1
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 4.5e-09 65.5 173 34.1
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 4.5e-09 65.5 176 36.9
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 4.5e-09 65.5 162 36.4
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 7.6e-09 64.7 132 40.2
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.0e-08 64.3 176 36.9
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.0e-08 64.3 176 36.9
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.0e-08 64.3 176 36.9
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-08 63.9 174 35.1
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.3e-08 63.9 171 35.7
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.3e-08 63.9 139 33.8
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.7e-08 63.5 176 35.2
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.7e-08 63.5 132 35.6
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 2.2e-08 63.2 169 33.1
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 2.9e-08 62.8 139 40.3
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.9e-08 62.8 167 28.7
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 4.9e-08 62.0 180 35.0
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 4.9e-08 62.0 163 31.3
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 8.4e-08 61.2 189 33.3
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.1e-07 60.8 157 35.7
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.4e-07 60.5 143 39.9
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.2e-07 59.3 166 31.9
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.5e-07 58.5 191 30.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 7.1e-07 58.2 148 35.8
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.2e-06 57.4 173 32.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.6e-06 57.0 174 32.2
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.6e-06 57.0 165 26.1
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.1e-06 56.6 179 32.4
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.1e-06 56.6 154 31.2
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 2.7e-06 56.2 166 29.5
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 3.5e-06 55.8 117 42.7
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 7.9e-06 54.7 173 33.5


User provided reference genes

Program Settings