Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0338941 Helianthus annuus HOM05D002044 ORTHO05D005000 8.6e-70 266.9 140 100.0
HanXRQChr09g0261201 Helianthus annuus HOM05D002044 ORTHO05D005000 6.9e-19 97.8 69 81.2
HanXRQChr11g0325541 Helianthus annuus HOM05D002044 ORTHO05D005000 2.6e-18 95.9 69 78.3
ECA232G0973 Erigeron canadensis HOM05D002044 ORTHO05D005000 2.9e-17 92.4 69 75.4
Sed0002815 Sechium edule HOM05D002044 ORTHO05D005000 1.9e-16 89.7 69 73.9
MELO3C010633.2 Cucumis melo HOM05D002044 ORTHO05D005000 4.2e-16 88.6 75 68.0
CsaV3_6G034240 Cucumis sativus L. HOM05D002044 ORTHO05D005000 5.5e-16 88.2 69 72.5
CAN.G1373.27 Capsicum annuum HOM05D002044 ORTHO05D005000 7.1e-16 87.8 69 71.0
PGR119G1800 Punica granatum HOM05D002044 ORTHO05D005000 7.1e-16 87.8 69 72.5
Solyc02g062540.3 Solanum lycopersicum HOM05D002044 ORTHO05D005000 7.1e-16 87.8 69 71.0
CANSAT01G0885 Cannabis sativa HOM05D002044 ORTHO05D005000 1.6e-15 86.7 69 69.6
CANSAT01G1521 Cannabis sativa HOM05D002044 ORTHO05D005000 1.6e-15 86.7 69 69.6
Nitab4.5_0000136g0180 Nicotiana tabacum HOM05D002044 ORTHO05D005000 1.6e-15 86.7 69 69.6
Lsat_1_v5_gn_9_109101 Lactuca sativa HOM05D002044 ORTHO05D005000 2.1e-15 86.3 69 71.0
Sopen02g013550 Solanum pennellii HOM05D002044 ORTHO05D005000 2.1e-15 86.3 69 69.6
PGSC0003DMG400015493 Solanum tuberosum HOM05D002044 ORTHO05D005000 2.1e-15 86.3 86 59.3
A09p44080 Brassica napus HOM05D002044 ORTHO05D005000 2.7e-15 85.9 86 58.1
Migut.H02517 Erythranthe guttata HOM05D002044 ORTHO05D005000 2.7e-15 85.9 69 71.0
Gohir.A12G062700 Gossypium hirsutum HOM05D002044 ORTHO05D005888 2.7e-15 85.9 79 67.1
Prupe.6G150600 Prunus persica HOM05D002044 ORTHO05D005000 2.7e-15 85.9 69 71.0
SGA_v2.0_scaffold12G06330 Striga asiatica HOM05D002044 ORTHO05D005000 2.7e-15 85.9 69 69.6
TWI73G0506 Tripterygium wilfordii HOM05D002044 ORTHO05D005000 2.7e-15 85.9 86 59.3
SalBow8G4592 Salvia bowleyana HOM05D002044 ORTHO05D005000 3.5e-15 85.5 78 64.1
Sc16g0009770 Simmondsia chinensis HOM05D002044 ORTHO05D005000 3.5e-15 85.5 80 61.2
Atru.chr3.661 Acer truncatum HOM05D002044 ORTHO05D005000 4.6e-15 85.1 69 72.5
Atru.chr3.706 Acer truncatum HOM05D002044 ORTHO05D005000 4.6e-15 85.1 69 72.5
Nitab4.5_0005274g0010 Nicotiana tabacum HOM05D002044 ORTHO05D005000 4.6e-15 85.1 69 69.6
Oeu016116.1 Olea europaea HOM05D002044 ORTHO05D005000 4.6e-15 85.1 69 71.0
Thecc.01G028600 Theobroma cacao HOM05D002044 ORTHO05D005000 4.6e-15 85.1 69 69.6
vmacro04739 Vaccinium macrocarpon HOM05D002044 ORTHO05D005000 4.6e-15 85.1 69 68.1
arahy.Tifrunner.gnm1.ann1.5QW7B0 Arachis hypogaea HOM05D002044 ORTHO05D005000 6.0e-15 84.7 110 50.9
arahy.Tifrunner.gnm1.ann1.W01EMI Arachis hypogaea HOM05D002044 ORTHO05D005000 6.0e-15 84.7 69 66.7
CiPaw.07G051300 Carya illinoinensis HOM05D002044 ORTHO05D005000 6.0e-15 84.7 69 71.0
ClCG01G019890 Citrullus lanatus HOM05D002044 ORTHO05D005000 6.0e-15 84.7 69 72.5
Lsat_1_v5_gn_5_168741 Lactuca sativa HOM05D002044 ORTHO05D005000 6.0e-15 84.7 69 69.6
Peaxi162Scf00008g03317 Petunia axillaris HOM05D002044 ORTHO05D005000 6.0e-15 84.7 69 68.1
QL06p035291 Quercus lobata HOM05D002044 ORTHO05D005000 7.9e-15 84.3 69 69.6
Sabra07G0017500 Salix brachista HOM05D002044 ORTHO05D005000 7.9e-15 84.3 60 76.7
SGA_v2.0_scaffold51G18807 Striga asiatica HOM05D002044 ORTHO05D005000 7.9e-15 84.3 69 68.1
Aa31LG1G14930 Aethionema arabicum HOM05D002044 ORTHO05D005000 1.0e-14 84.0 72 65.3
Cfa021838 Carpinus fangiana HOM05D002044 ORTHO05D005000 1.0e-14 84.0 69 68.1
Dinv42846 Davidia involucrata HOM05D002044 ORTHO05D005000 1.0e-14 84.0 69 69.6
Dinv43254 Davidia involucrata HOM05D002044 ORTHO05D005000 1.0e-14 84.0 69 69.6
Manes.01G139600 Manihot esculenta HOM05D002044 ORTHO05D005000 1.0e-14 84.0 69 69.6
AT3G50960 Arabidopsis thaliana HOM05D002044 ORTHO05D005000 1.3e-14 83.6 86 57.0
CARHR160540 Cardamine hirsuta HOM05D002044 ORTHO05D005000 1.3e-14 83.6 86 57.0
CiPaw.07G050300 Carya illinoinensis HOM05D002044 ORTHO05D005000 1.3e-14 83.6 69 69.6
Gohir.A11G182100 Gossypium hirsutum HOM05D002044 ORTHO05D005000 1.3e-14 83.6 69 68.1
Gohir.D12G062550 Gossypium hirsutum HOM05D002044 ORTHO05D005888 1.3e-14 83.6 69 72.5
Gorai.008G065600 Gossypium raimondii HOM05D002044 ORTHO05D005888 1.3e-14 83.6 69 72.5
Nn5g28996 Nelumbo nucifera HOM05D002044 ORTHO05D005000 1.3e-14 83.6 97 57.7
THA.LOC104800774 Tarenaya hassleriana HOM05D002044 ORTHO05D005000 1.3e-14 83.6 71 66.2
VMungo0251G3718 Vigna mungo HOM05D002044 ORTHO05D005000 1.3e-14 83.6 69 68.1
BcaB01g00558 Brassica carinata HOM05D002044 ORTHO05D005000 1.8e-14 83.2 86 55.8
BcaC07g39569 Brassica carinata HOM05D002044 ORTHO05D005000 1.8e-14 83.2 86 55.8
BcaC07g39571 Brassica carinata HOM05D002044 ORTHO05D005000 1.8e-14 83.2 86 55.8
Gorai.007G200900 Gossypium raimondii HOM05D002044 ORTHO05D005000 1.8e-14 83.2 69 66.7
TAR625G1168 Trochodendron aralioides HOM05D002044 ORTHO05D005000 1.8e-14 83.2 69 66.7
Actinidia38434 Actinidia chinensis HOM05D002044 ORTHO05D005000 2.3e-14 82.8 69 68.1
MSTRG.23256 Avicennia marina HOM05D002044 ORTHO05D005000 2.3e-14 82.8 69 69.6
BcaC09g50060 Brassica carinata HOM05D000363 ORTHO05D005000 2.3e-14 82.8 86 55.8
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 2.3e-14 82.8 86 55.8
C01p29480 Brassica napus HOM05D000363 ORTHO05D005000 2.3e-14 82.8 86 55.8
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 2.3e-14 82.8 86 55.8
BolC1t02889H Brassica oleracea HOM05D002044 ORTHO05D005000 2.3e-14 82.8 86 55.8
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 2.3e-14 82.8 86 55.8
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 2.3e-14 82.8 86 55.8
Cc07_g09970 Coffea canephora HOM05D002044 ORTHO05D005000 2.3e-14 82.8 69 66.7
COL.COLO4_22017 Corchorus olitorius HOM05D000394 ORTHO05D000299 2.3e-14 82.8 69 66.7
Duzib187G0459 Durio zibethinus HOM05D002044 ORTHO05D005000 2.3e-14 82.8 69 68.1
MD02G1141000 Malus domestica HOM05D002044 ORTHO05D005000 2.3e-14 82.8 69 68.1
Medtr8g076890 Medicago truncatula HOM05D002044 ORTHO05D005000 2.3e-14 82.8 119 46.2
Sp5g11240 Schrenkiella parvula HOM05D002044 ORTHO05D005000 2.3e-14 82.8 86 55.8
TAR381G0355 Trochodendron aralioides HOM05D002044 ORTHO05D005000 2.3e-14 82.8 69 65.2
BcaC07g39566 Brassica carinata HOM05D002044 ORTHO05D005000 3.0e-14 82.4 86 55.8
C08p26220 Brassica napus HOM05D002044 ORTHO05D005000 3.0e-14 82.4 86 55.8
BolC8t50240H Brassica oleracea HOM05D002044 ORTHO05D005000 3.0e-14 82.4 86 55.8
BraA09t39866Z Brassica rapa HOM05D002044 ORTHO05D005000 3.0e-14 82.4 86 55.8
Carub.0005s1736 Capsella rubella HOM05D002044 ORTHO05D005000 3.0e-14 82.4 86 55.8
Eucgr.I02400 Eucalyptus grandis HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 65.2
FvH4_1g12650 Fragaria vesca HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 68.1
FAN19G2717 Fragaria x ananassa HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 68.1
Glyma.02G053300 Glycine max HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 68.1
Hma1.2p1_1297F.1_g274030 Hydrangea macrophylla HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 66.7
Lalb_Chr05g0225171 Lupinus albus HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 69.6
MD15G1253500 Malus domestica HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 66.7
Phvul.003G256900 Phaseolus vulgaris HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 66.7
Potri.007G020400 Populus trichocarpa HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 66.7
GSVIVG01018889001 Vitis vinifera HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 66.7
GSVIVG01023465001 Vitis vinifera HOM05D002044 ORTHO05D005000 3.0e-14 82.4 69 65.2
Haze_13703 Corylus avellana HOM05D002044 ORTHO05D005000 3.9e-14 82.0 69 66.7
Duzib264G0515 Durio zibethinus HOM05D002044 ORTHO05D005000 3.9e-14 82.0 69 66.7
BcaNung00405 Brassica carinata HOM05D002044 ORTHO05D005000 5.1e-14 81.6 86 54.7
Ca_22334_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 5.1e-14 81.6 69 68.1
Ca_22338_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 5.1e-14 81.6 69 68.1
FAN23G1746 Fragaria x ananassa HOM05D002044 ORTHO05D005000 5.1e-14 81.6 69 66.7
FAN26G1165 Fragaria x ananassa HOM05D002044 ORTHO05D005000 5.1e-14 81.6 69 66.7
Gohir.D11G188800 Gossypium hirsutum HOM05D002044 ORTHO05D005000 5.1e-14 81.6 69 65.2
FAN28G2878 Fragaria x ananassa HOM05D002044 ORTHO05D005000 6.7e-14 81.3 69 66.7
EL10Ac4g09698 Beta vulgaris HOM05D002044 ORTHO05D005000 8.7e-14 80.9 69 63.8
BcaC06g33064 Brassica carinata HOM05D000363 ORTHO05D000236 8.7e-14 80.9 69 65.2
Carub.0008s2810 Capsella rubella HOM05D002044 ORTHO05D005000 8.7e-14 80.9 86 54.7
SalBow1G5811 Salvia bowleyana HOM05D002044 ORTHO05D005000 8.7e-14 80.9 69 68.1
AL8G45120 Arabidopsis lyrata HOM05D002044 ORTHO05D005000 1.1e-13 80.5 86 54.7
AT5G66410 Arabidopsis thaliana HOM05D002044 ORTHO05D005000 1.1e-13 80.5 86 54.7
CSS0033828 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 1.1e-13 80.5 69 65.2
CSS0037031 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 1.1e-13 80.5 69 65.2
Psat4g095920 Pisum sativum HOM05D002044 ORTHO05D005000 1.5e-13 80.1 69 65.2
TPR.G21543 Trifolium pratense HOM05D002044 ORTHO05D005000 1.5e-13 80.1 69 65.2
Hund07197 Selenicereus undatus HOM05D002044 ORTHO05D005000 1.9e-13 79.7 69 63.8
Cpa.g.sc6.171 Carica papaya HOM05D002044 ORTHO05D005000 2.5e-13 79.3 69 66.7
Ca_22453_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 2.5e-13 79.3 69 65.2
Ciclev10027615m.g Citrus clementina HOM05D002044 ORTHO05D005000 2.5e-13 79.3 69 68.1
FvH4_5g33310 Fragaria vesca HOM05D002044 ORTHO05D005000 2.5e-13 79.3 69 66.7
Os05g0255600 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005000 2.5e-13 79.3 69 60.9
unitig_52.g17472 Utricularia gibba HOM05D002044 ORTHO05D005000 2.5e-13 79.3 69 66.7
Glyma.14G219400 Glycine max HOM05D002044 ORTHO05D005000 5.7e-13 78.2 69 65.2
Os11g0604700 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005000 5.7e-13 78.2 69 59.4
CSS0036707 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005000 9.6e-13 77.4 69 62.3
RcHm_v2.0_Chr2g0100611 Rosa chinensis HOM05D002044 ORTHO05D005000 9.6e-13 77.4 69 60.9
AUR62018531 Chenopodium quinoa HOM05D002044 ORTHO05D005000 1.3e-12 77.0 69 60.9
Lj2g0004786 Lotus japonicus HOM05D002044 ORTHO05D005000 4.8e-12 75.1 69 65.2
SHI08635 Sapria himalayana HOM05D002044 ORTHO05D005000 6.3e-12 74.7 72 59.7
Zm00001eb167250 Zea mays HOM05D002044 ORTHO05D005000 6.3e-12 74.7 69 56.5
CDE10G0804 Ceratophyllum demersum HOM05D002044 ORTHO05D005000 8.2e-12 74.3 69 59.4
Lj2C458T3 Lonicera japonica HOM05D002044 ORTHO05D005000 8.2e-12 74.3 69 63.8
CDE10G0985 Ceratophyllum demersum HOM05D002044 ORTHO05D005000 1.1e-11 73.9 69 59.4
AUR62020887 Chenopodium quinoa HOM05D002044 ORTHO05D005000 1.4e-11 73.6 69 59.4
ATR0564G141 Amborella trichopoda HOM05D002044 ORTHO05D005000 2.4e-11 72.8 69 58.0
THA.LOC104821302 Tarenaya hassleriana HOM05D002044 ORTHO05D005000 2.4e-11 72.8 77 57.1
Haze_05175 Corylus avellana HOM05D002044 ORTHO05D005000 9.0e-11 70.9 65 64.6
DCAR_018301 Daucus carota HOM05D002044 ORTHO05D005000 1.0e-09 67.4 40 85.0
PSO339G3999 Papaver somniferum HOM05D002044 ORTHO05D005000 1.0e-09 67.4 69 55.1
PSO384G3579 Papaver somniferum HOM05D002044 ORTHO05D005000 1.3e-09 67.0 69 56.5
Nitab4.5_0009648g0030 Nicotiana tabacum HOM05D002044 ORTHO05D005000 2.9e-09 65.9 39 84.6
Prupe.5G010500 Prunus persica HOM05D002044 ORTHO05D005000 8.5e-09 64.3 40 85.0
AL5G31360 Arabidopsis lyrata HOM05D002044 ORTHO05D005000 1.1e-08 63.9 57 61.4
ClCG08G005880 Citrullus lanatus HOM05D002044 ORTHO05D005000 2.5e-08 62.8 46 80.4
MBI02_g37834_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005000 2.5e-08 62.8 40 82.5
CARHR034760 Cardamine hirsuta HOM05D002044 ORTHO05D005000 7.2e-08 61.2 57 59.6
Manes.02G097501 Manihot esculenta HOM05D002044 ORTHO05D005000 9.3e-08 60.8 58 60.3
AUR62020886 Chenopodium quinoa HOM05D002044 ORTHO05D005000 2.7e-07 59.3 40 70.0
Lj4g0007934 Lotus japonicus HOM05D000394 ORTHO05D000299 3.6e-07 58.9 69 55.1
SMO164G0166 Selaginella moellendorffii HOM05D002044 ORTHO05D005000 4.6e-07 58.5 69 52.2
BraA01t02282Z Brassica rapa HOM05D002044 ORTHO05D005000 6.1e-07 58.2 86 45.3
Mapoly0077s0014 Marchantia polymorpha HOM05D002044 ORTHO05D005000 2.3e-06 56.2 68 45.6


User provided reference genes

Program Settings