Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 9.4e-30 132.9 68 100.0
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 2.5e-22 108.2 66 77.3
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 2.0e-16 88.6 66 62.1
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 2.7e-16 88.2 68 64.7
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.0e-15 86.3 65 60.0
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.0e-15 86.3 65 60.0
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.3e-15 85.9 68 61.8
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.3e-15 85.9 67 59.7
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-15 85.1 65 58.5
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 2.9e-15 84.7 68 60.3
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 2.9e-15 84.7 68 60.3
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.9e-15 84.7 64 62.5
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.9e-15 84.7 64 62.5
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.0e-15 84.0 65 60.0
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 6.5e-15 83.6 64 62.5
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 6.5e-15 83.6 66 59.1
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 8.5e-15 83.2 64 60.9
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.5e-15 83.2 60 63.3
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.5e-15 83.2 60 63.3
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.1e-14 82.8 64 60.9
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.5e-14 82.4 65 60.0
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 1.9e-14 82.0 51 76.5
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 1.9e-14 82.0 65 55.4
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.5e-14 81.6 64 59.4
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 2.5e-14 81.6 65 63.1
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.2e-14 81.3 66 56.1
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 5.5e-14 80.5 65 53.8
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 7.2e-14 80.1 64 62.5
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.4e-14 79.7 68 57.4
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 9.4e-14 79.7 65 58.5
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 9.4e-14 79.7 64 62.5
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 2.1e-13 78.6 65 55.4
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 2.1e-13 78.6 65 55.4
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 2.7e-13 78.2 67 52.2
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 3.6e-13 77.8 65 56.9
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.7e-13 77.4 59 61.0
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 4.7e-13 77.4 65 53.8
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 8.0e-13 76.6 65 53.8
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 8.0e-13 76.6 64 54.7
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 8.0e-13 76.6 68 52.9
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.0e-12 76.3 64 54.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.0e-12 76.3 62 59.7
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 1.4e-12 75.9 65 55.4
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.8e-12 75.5 59 57.6
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.3e-12 75.1 67 50.7
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.3e-12 75.1 64 59.4
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 2.3e-12 75.1 63 58.7
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.0e-12 74.7 67 50.7
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.0e-12 74.7 67 50.7
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.0e-12 74.7 63 57.1
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 4.0e-12 74.3 58 60.3
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 6.8e-12 73.6 65 53.8
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 8.8e-12 73.2 60 55.0
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 8.8e-12 73.2 66 50.0
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.2e-11 72.8 58 60.3
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.2e-11 72.8 58 60.3
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 2.6e-11 71.6 54 63.0
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 3.4e-11 71.2 64 54.7
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.7e-11 70.5 65 53.8
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.7e-11 70.5 64 57.8
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 7.5e-11 70.1 62 53.2
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.5e-11 70.1 67 52.2
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 7.5e-11 70.1 65 52.3
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 9.8e-11 69.7 62 53.2
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 9.8e-11 69.7 62 54.8
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.3e-10 69.3 59 54.2
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.3e-10 69.3 65 50.8
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.7e-10 68.9 67 50.7
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.7e-10 68.9 67 50.7
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.7e-10 68.9 67 50.7
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 2.2e-10 68.6 62 54.8
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 2.8e-10 68.2 67 49.3
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.8e-10 68.2 57 56.1
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.3e-10 67.0 56 57.1
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 8.3e-10 66.6 67 49.3
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 8.3e-10 66.6 67 47.8
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 8.3e-10 66.6 64 50.0
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 8.3e-10 66.6 67 50.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 8.3e-10 66.6 57 54.4
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 50.0
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 1.4e-09 65.9 66 48.5
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.4e-09 65.9 57 52.6
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.4e-09 65.9 51 64.7
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.4e-09 65.9 62 50.0
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.8e-09 65.5 65 49.2
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.8e-09 65.5 67 49.3
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 2.4e-09 65.1 65 50.8
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 2.4e-09 65.1 58 50.0
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 2.4e-09 65.1 62 50.0
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.1e-09 64.7 57 54.4
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 3.1e-09 64.7 64 46.9
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.1e-09 64.7 65 44.6
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.1e-09 64.7 65 44.6
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 4.1e-09 64.3 61 50.8
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 4.1e-09 64.3 62 50.0
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 5.4e-09 63.9 65 49.2
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 5.4e-09 63.9 62 53.2
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.4e-09 63.9 57 49.1
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 5.4e-09 63.9 57 49.1
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 7.0e-09 63.5 65 49.2
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 7.0e-09 63.5 58 51.7
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.2e-08 62.8 63 47.6
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.6e-08 62.4 65 47.7
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.6e-08 62.4 57 47.4
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.0e-08 62.0 62 46.8
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 2.0e-08 62.0 62 53.2
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 2.7e-08 61.6 59 50.8
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 2.7e-08 61.6 57 52.6
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 3.5e-08 61.2 62 48.4
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.5e-08 61.2 57 47.4
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.5e-08 60.8 57 50.9
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.9e-08 60.5 62 48.4
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 7.7e-08 60.1 62 46.8
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 1.3e-07 59.3 63 44.4
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 1.3e-07 59.3 63 44.4
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 2.3e-07 58.5 65 44.6
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 2.3e-07 58.5 62 45.2
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 2.3e-07 58.5 67 44.8
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 2.3e-07 58.5 67 46.3
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 5.0e-07 57.4 65 44.6
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 5.0e-07 57.4 67 47.8
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 6.6e-07 57.0 67 43.3
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 6.6e-07 57.0 67 43.3
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.6e-07 57.0 56 46.4
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.6e-07 57.0 56 46.4
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.6e-07 56.6 62 41.9
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.6e-07 56.6 62 41.9
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 8.6e-07 56.6 62 45.2
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 8.6e-07 56.6 62 45.2
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 8.6e-07 56.6 59 47.5
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 1.1e-06 56.2 57 47.4
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 1.1e-06 56.2 57 47.4
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.5e-06 55.8 62 45.2
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.5e-06 55.8 58 50.0
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.9e-06 55.5 67 41.8
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.9e-06 55.5 67 41.8
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.9e-06 55.5 67 41.8
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 1.9e-06 55.5 41 65.9
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.9e-06 55.5 62 41.9
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 3.3e-06 54.7 62 41.9
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 3.3e-06 54.7 68 44.1
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.2e-06 54.3 62 45.2
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 4.2e-06 54.3 65 44.6
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 7.2e-06 53.5 67 43.3
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.2e-06 53.5 53 47.2
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 9.5e-06 53.1 67 40.3


User provided reference genes

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