Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 3.1e-162 575.1 293 100.0
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 8.0e-118 427.6 308 78.2
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 2.2e-107 392.9 296 74.3
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 2.2e-107 392.9 303 73.9
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 1.4e-82 310.5 317 59.3
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 8.6e-80 301.2 324 57.1
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.4e-77 293.9 310 59.0
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 6.8e-77 291.6 314 57.0
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 4.4e-76 288.9 316 56.6
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 5.4e-74 282.0 320 55.9
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.1e-65 253.4 316 50.6
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 1.1e-63 247.7 327 51.7
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.1e-63 247.7 318 50.3
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 9.5e-63 244.6 338 51.5
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.1e-61 241.1 331 48.6
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 4.0e-61 239.2 294 52.0
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 8.9e-61 238.0 334 48.5
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 8.9e-61 238.0 342 47.7
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 3.4e-60 236.1 316 49.4
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.7e-59 233.8 308 48.4
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 2.2e-59 233.4 315 49.8
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.9e-59 232.3 308 48.4
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.1e-58 231.1 303 48.5
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.2e-57 227.6 326 47.9
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.3e-56 224.2 309 47.2
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.7e-56 223.8 314 46.8
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 3.0e-56 223.0 304 49.7
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 3.9e-56 222.6 330 47.6
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 5.1e-56 222.2 321 48.6
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 2.5e-55 219.9 273 51.6
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 5.6e-55 218.8 329 46.8
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 1.3e-54 217.6 401 42.6
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.6e-54 216.1 306 48.7
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 3.6e-54 216.1 326 46.0
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 8.1e-54 214.9 298 48.3
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.4e-53 213.4 308 48.1
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 6.9e-53 211.8 297 48.1
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 3.4e-52 209.5 287 48.4
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 3.4e-52 209.5 300 47.0
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 3.4e-52 209.5 312 45.2
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 5.8e-52 208.8 231 57.1
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 7.6e-52 208.4 288 49.0
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.3e-51 207.6 322 46.3
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 3.8e-51 206.1 280 49.6
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.1e-50 204.5 323 46.1
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 2.4e-50 203.4 256 50.8
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 5.4e-50 202.2 293 47.4
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.7e-49 199.9 310 45.8
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 3.5e-49 199.5 263 50.6
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 5.1e-48 195.7 317 45.4
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.1e-47 194.5 321 44.9
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 2.5e-47 193.4 278 46.8
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 5.6e-47 192.2 259 46.3
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 9.6e-47 191.4 247 50.2
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 2.8e-46 189.9 305 43.0
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.8e-45 187.2 306 43.1
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 5.3e-45 185.7 307 43.0
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 9.0e-45 184.9 301 42.2
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 1.5e-44 184.1 292 44.2
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.0e-44 183.7 290 43.8
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 2.6e-44 183.3 311 43.7
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 7.6e-44 181.8 309 43.4
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 9.9e-44 181.4 290 44.1
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.3e-43 181.0 292 43.2
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.7e-43 180.6 335 43.9
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.7e-43 180.6 286 45.5
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 4.9e-43 179.1 290 43.8
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.4e-42 177.6 263 45.6
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 1.9e-42 177.2 329 40.7
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 1.9e-42 177.2 314 41.7
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 1.9e-42 177.2 302 41.4
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 2.4e-42 176.8 313 41.9
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 3.2e-42 176.4 303 41.9
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 3.2e-42 176.4 308 40.9
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 3.2e-42 176.4 308 42.9
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 9.3e-42 174.9 301 40.2
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 9.3e-42 174.9 315 42.2
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.2e-41 174.5 311 40.8
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.2e-41 174.5 321 40.2
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 1.6e-41 174.1 311 40.8
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 4.6e-41 172.6 303 42.2
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 4.6e-41 172.6 256 46.9
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.0e-40 171.4 265 43.4
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 2.3e-40 170.2 312 42.0
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 3.0e-40 169.9 268 43.3
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 3.9e-40 169.5 265 43.8
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.5e-39 167.5 312 41.3
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 1.5e-39 167.5 298 41.6
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.9e-39 167.2 308 40.9
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.3e-39 166.4 272 42.3
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 9.6e-39 164.9 298 41.9
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 2.8e-38 163.3 279 40.5
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 6.2e-38 162.2 307 42.0
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 8.1e-38 161.8 284 41.2
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.8e-37 160.6 274 40.9
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 1.8e-37 160.6 282 40.4
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 2.4e-37 160.2 283 41.7
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 2.4e-37 160.2 267 42.3
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 3.1e-37 159.8 278 41.0
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 4.0e-37 159.5 274 41.2
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 4.0e-37 159.5 279 40.9
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 4.0e-37 159.5 277 41.2
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 5.3e-37 159.1 319 38.9
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 9.0e-37 158.3 293 40.6
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.2e-36 157.9 287 39.7
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 2.0e-36 157.1 282 40.4
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 2.6e-36 156.8 275 40.4
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 4.5e-36 156.0 308 37.3
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 7.6e-36 155.2 204 47.1
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 7.6e-36 155.2 280 39.6
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 7.6e-36 155.2 306 39.9
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.0e-35 154.8 304 38.8
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 1.3e-35 154.5 286 39.5
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.7e-35 154.1 283 40.6
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.7e-35 154.1 260 41.2
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 1.1e-34 151.4 264 40.5
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.1e-34 151.4 319 37.0
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 2.5e-34 150.2 304 37.8
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.2e-34 149.4 321 37.1
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 4.2e-34 149.4 177 49.2
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 9.3e-34 148.3 272 41.2
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 9.3e-34 148.3 293 38.6
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 1.2e-33 147.9 304 37.5
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.2e-33 147.9 230 44.8
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 2.1e-33 147.1 304 39.5
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.7e-33 146.7 317 36.6
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 4.6e-33 146.0 269 40.5
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.0e-32 144.8 188 48.9
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 3.9e-32 142.9 234 43.6
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 2.5e-31 140.2 269 40.5
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 5.7e-31 139.0 194 49.0
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 5.7e-31 139.0 304 38.5
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 2.4e-29 133.7 267 37.8
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 3.1e-29 133.3 320 35.0
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 4.0e-29 132.9 192 46.4
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.0e-28 130.6 276 35.5
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.4e-28 129.8 293 37.2
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 5.8e-28 129.0 247 38.1
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.4e-26 124.4 277 37.9
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.9e-26 124.0 259 37.5
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.2e-26 123.2 291 33.3
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 3.2e-26 123.2 311 34.7
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.5e-23 114.4 183 43.2
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.3e-23 113.2 274 34.3
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.6e-22 110.9 139 48.9
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 8.2e-22 108.6 259 34.4
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 6.9e-21 105.5 261 33.0
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.5e-20 104.4 253 34.4
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 2.6e-20 103.6 137 51.1
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 2.6e-20 103.6 103 55.3
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 4.5e-20 102.8 84 63.1
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 4.5e-20 102.8 84 63.1
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.4e-16 91.3 251 32.7
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 2.5e-15 87.0 150 39.3
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.7e-11 74.3 93 51.6
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.7e-11 74.3 93 44.1
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.4e-10 71.2 204 32.8
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.2e-09 68.2 151 39.7
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.4e-08 64.7 103 47.6
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 6.3e-06 55.8 122 35.2
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 6.3e-06 55.8 60 46.7


User provided reference genes

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