Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 3.5e-253 877.9 467 100.0
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.1e-169 600.5 452 68.4
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.3e-141 507.3 337 73.9
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.2e-139 500.7 395 62.5
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.3e-135 487.3 486 55.8
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.1e-134 484.2 483 54.2
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 9.4e-129 464.5 483 53.6
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.6e-123 446.4 346 63.9
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 5.9e-123 445.3 459 52.5
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 5.9e-123 445.3 424 55.4
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.8e-122 442.6 350 63.7
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.8e-122 442.6 350 63.7
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.8e-119 433.7 408 62.0
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 5.1e-119 432.2 423 54.1
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.1e-118 431.0 408 58.3
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 5.7e-118 428.7 450 53.3
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 9.7e-118 427.9 481 47.2
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.6e-115 419.9 347 61.4
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.3e-114 417.5 420 51.7
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 3.8e-114 416.0 332 63.9
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 3.8e-114 416.0 450 48.9
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 1.1e-113 414.5 401 52.4
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.5e-113 414.1 425 51.1
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 1.9e-113 413.7 459 47.9
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 1.9e-113 413.7 428 51.4
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 1.9e-113 413.7 401 51.4
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.9e-113 413.7 476 47.1
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 7.2e-113 411.8 421 51.5
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.6e-112 410.6 421 51.8
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.6e-112 409.5 394 52.0
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.0e-111 406.4 421 50.6
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 4.0e-111 406.0 413 53.0
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 6.7e-111 405.2 394 52.3
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 6.7e-111 405.2 428 52.1
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 8.8e-111 404.8 438 49.3
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 2.0e-110 403.7 421 50.8
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 4.4e-110 402.5 395 51.4
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 5.7e-110 402.1 421 51.1
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 5.7e-110 402.1 456 49.3
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.3e-109 401.0 395 51.9
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 1.3e-109 401.0 424 48.8
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.7e-109 400.6 393 51.9
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 2.2e-109 400.2 379 53.6
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 3.7e-109 399.4 393 51.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.1e-108 397.9 420 50.0
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.1e-108 397.9 396 51.8
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.4e-108 397.5 474 48.3
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.4e-108 397.5 401 51.1
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 4.1e-108 396.0 395 50.6
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 7.0e-108 395.2 423 50.1
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 7.0e-108 395.2 395 50.1
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 9.1e-108 394.8 474 46.2
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 1.2e-107 394.4 432 49.3
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 2.6e-107 393.3 427 47.8
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 7.7e-107 391.7 434 45.6
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.0e-106 391.3 478 46.2
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.0e-106 391.3 426 49.3
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 1.0e-106 391.3 420 49.5
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 1.7e-106 390.6 399 50.9
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 2.2e-106 390.2 421 50.1
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 2.9e-106 389.8 420 48.8
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 1.1e-105 387.9 424 47.2
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.9e-105 387.1 394 50.8
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 4.2e-105 386.0 397 49.1
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.2e-104 384.4 483 50.1
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 2.1e-104 383.6 450 49.8
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 8.0e-104 381.7 448 49.8
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.4e-103 380.9 483 48.0
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.4e-103 380.9 483 48.0
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.8e-103 380.6 381 50.4
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.2e-102 377.9 425 48.9
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 5.7e-102 375.6 428 47.4
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 1.3e-101 374.4 426 49.1
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.3e-101 374.4 426 47.2
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 2.2e-101 373.6 420 49.0
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 3.7e-101 372.9 400 49.2
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 6.3e-101 372.1 466 45.3
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 4.1e-100 369.4 466 45.1
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 5.4e-100 369.0 404 49.0
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.0e-99 367.1 397 46.6
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 2.7e-99 366.7 404 48.8
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 2.7e-99 366.7 404 48.8
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 2.7e-99 366.7 389 47.8
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 2.7e-99 366.7 485 43.7
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 7.7e-99 365.2 347 54.8
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 3.2e-97 359.8 406 52.2
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 2.3e-95 353.6 402 46.5
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.0e-94 350.5 370 48.6
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.4e-92 344.4 347 51.6
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 2.3e-90 337.0 343 51.3
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 2.8e-88 330.1 419 41.5
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 4.7e-88 329.3 315 58.1
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 5.2e-87 325.9 350 50.6
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 2.8e-80 303.5 340 47.4
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.7e-74 284.3 276 50.7
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 2.4e-68 263.8 430 37.4
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 3.4e-62 243.4 182 64.3
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 3.6e-56 223.4 374 36.4
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 5.8e-54 216.1 396 32.1
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 7.6e-54 215.7 346 37.3
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 4.3e-49 199.9 302 39.7
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 3.8e-45 186.8 295 40.3
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 7.4e-41 172.6 472 30.9
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 1.1e-36 158.7 381 29.4
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 3.0e-34 150.6 171 50.3
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 8.7e-34 149.1 196 45.9
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.9e-33 147.9 175 50.3
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.7e-32 143.7 175 49.7
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 6.5e-29 132.9 181 37.0
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 8.2e-16 89.4 100 53.0
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.6e-11 73.9 62 54.8
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 7.7e-06 56.2 60 43.3


User provided reference genes

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