Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0338411 Helianthus annuus HOM05D007403 ORTHO05D009306 1.1e-245 852.8 409 100.0
Dinv19355 Davidia involucrata HOM05D007403 ORTHO05D009306 5.8e-175 617.8 405 70.1
CSS0040815 Camellia sinensis var. sinensis HOM05D007403 ORTHO05D009306 1.2e-164 583.6 408 66.9
CSS0033747 Camellia sinensis var. sinensis HOM05D007403 ORTHO05D009306 8.7e-163 577.4 408 66.2
Prupe.1G562100 Prunus persica HOM05D007403 ORTHO05D009306 2.0e-159 566.2 405 64.9
TWI59G1473 Tripterygium wilfordii HOM05D007403 ORTHO05D009306 8.4e-158 560.8 413 63.2
MD08G1224800 Malus domestica HOM05D007403 ORTHO05D009306 3.2e-157 558.9 403 65.0
Lsat_1_v5_gn_7_77881 Lactuca sativa HOM05D007403 ORTHO05D009306 1.6e-156 556.6 407 66.3
Potri.003G021100 Populus trichocarpa HOM05D007403 ORTHO05D009306 4.6e-156 555.1 402 63.7
TAR381G0205 Trochodendron aralioides HOM05D007403 ORTHO05D009306 6.0e-156 554.7 401 63.8
Cc02_g22320 Coffea canephora HOM05D007403 ORTHO05D009306 1.8e-155 553.1 405 64.2
Thecc.02G040500 Theobroma cacao HOM05D007403 ORTHO05D009306 1.9e-154 549.7 403 63.8
Duzib132G0321 Durio zibethinus HOM05D007403 ORTHO05D009306 9.6e-154 547.4 403 64.3
Lj5A250G19 Lonicera japonica HOM05D007403 ORTHO05D009306 1.3e-153 547.0 435 63.2
Atru.chr6.1105 Acer truncatum HOM05D007403 ORTHO05D009306 6.2e-153 544.7 404 63.1
GSVIVG01023003001 Vitis vinifera HOM05D007403 ORTHO05D009306 2.2e-150 536.2 395 63.8
Lj6g0017074 Lotus japonicus HOM05D007403 ORTHO05D009306 1.9e-149 533.1 404 62.1
TPR.G15151 Trifolium pratense HOM05D007403 ORTHO05D009306 2.5e-149 532.7 403 61.8
Migut.B00669 Erythranthe guttata HOM05D007403 ORTHO05D009306 4.2e-149 531.9 404 60.4
Gorai.008G041600 Gossypium raimondii HOM05D007403 ORTHO05D009306 3.5e-148 528.9 398 61.6
Gohir.D12G039900 Gossypium hirsutum HOM05D007403 ORTHO05D009306 4.6e-148 528.5 398 61.3
Sopen01g046850 Solanum pennellii HOM05D007403 ORTHO05D009306 1.0e-147 527.3 404 62.1
Lalb_Chr18g0060841 Lupinus albus HOM05D007403 ORTHO05D009306 1.3e-147 526.9 408 60.8
Nn5g28844 Nelumbo nucifera HOM05D007403 ORTHO05D009306 1.3e-147 526.9 402 59.5
QL02p098561 Quercus lobata HOM05D007403 ORTHO05D009306 6.7e-147 524.6 389 63.0
Manes.10G131400 Manihot esculenta HOM05D007403 ORTHO05D009306 1.5e-146 523.5 403 60.5
Glyma.08G184700 Glycine max HOM05D007403 ORTHO05D009306 2.5e-146 522.7 403 62.3
Medtr2g043740 Medicago truncatula HOM05D007403 ORTHO05D009306 9.6e-146 520.8 403 60.5
Ah.12g064270 Amaranthus hybridus HOM05D007403 ORTHO05D009306 5.3e-144 515.0 405 59.3
VMungo0540G0348 Vigna mungo HOM05D007403 ORTHO05D009306 3.4e-143 512.3 432 58.3
MBI04_g33335_MAGBIO Magnolia biondii HOM05D007403 ORTHO05D009306 1.0e-142 510.8 417 59.0
COL.COLO4_17887 Corchorus olitorius HOM05D007403 ORTHO05D009306 1.7e-142 510.0 384 63.3
Aqoxy5G02020 Aquilegia oxysepala HOM05D007403 ORTHO05D009306 2.2e-142 509.6 402 59.2
Hma1.2p1_0557F.1_g178350 Hydrangea macrophylla HOM05D007403 ORTHO05D009306 2.9e-142 509.2 385 64.9
AUR62024767 Chenopodium quinoa HOM05D007403 ORTHO05D009306 4.9e-142 508.4 404 59.9
EL10Ac2g02449 Beta vulgaris HOM05D007403 ORTHO05D009306 8.4e-142 507.7 403 59.6
Sabra03G0012400 Salix brachista HOM05D007403 ORTHO05D009306 8.4e-142 507.7 404 59.9
Psat1g137240 Pisum sativum HOM05D007403 ORTHO05D009306 2.5e-141 506.1 403 58.6
Carub.0006s2260 Capsella rubella HOM05D007403 ORTHO05D009306 3.2e-141 505.8 408 60.0
CANSAT11G1055 Cannabis sativa HOM05D007403 ORTHO05D009306 6.1e-140 501.5 403 58.8
AUR62037684 Chenopodium quinoa HOM05D007403 ORTHO05D009306 7.9e-140 501.1 404 58.9
RcHm_v2.0_Chr7g0224451 Rosa chinensis HOM05D007403 ORTHO05D009306 7.9e-140 501.1 404 59.2
SalBow5G2609 Salvia bowleyana HOM05D007403 ORTHO05D009306 8.7e-139 497.7 467 53.3
CARHR188740 Cardamine hirsuta HOM05D007403 ORTHO05D009306 1.5e-138 496.9 407 58.5
Ciclev10000975m.g Citrus clementina HOM05D007403 ORTHO05D009306 4.3e-138 495.4 397 58.4
AT5G24750 Arabidopsis thaliana HOM05D007403 ORTHO05D009306 2.2e-137 493.0 405 59.3
Nitab4.5_0006604g0010 Nicotiana tabacum HOM05D007403 ORTHO05D009306 3.7e-137 492.3 404 58.9
Thhalv10004004m.g Eutrema salsugineum HOM05D007403 ORTHO05D009306 3.1e-136 489.2 408 58.3
AL6G36340 Arabidopsis lyrata HOM05D007403 ORTHO05D009306 9.0e-136 487.6 403 58.8
BolC2t12064H Brassica oleracea HOM05D007403 ORTHO05D009306 1.2e-135 487.3 408 57.6
Sp2g22680 Schrenkiella parvula HOM05D007403 ORTHO05D009306 2.0e-135 486.5 406 57.6
BcaC03g17949 Brassica carinata HOM05D000219 ORTHO05D009306 3.4e-135 485.7 403 57.6
BcaB07g29919 Brassica carinata HOM05D007403 ORTHO05D009306 4.5e-135 485.3 404 57.9
BraA02t08979Z Brassica rapa HOM05D007403 ORTHO05D009306 4.5e-135 485.3 405 57.5
THA.LOC104798998 Tarenaya hassleriana HOM05D007403 ORTHO05D009306 7.7e-135 484.6 404 56.7
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 3.6e-132 475.7 428 54.7
DCAR_001817 Daucus carota HOM05D007403 ORTHO05D009306 1.8e-131 473.4 404 56.9
Aa31LG11G3980 Aethionema arabicum HOM05D007403 ORTHO05D009306 1.8e-128 463.4 457 51.2
C02p60090 Brassica napus HOM05D000219 ORTHO05D009306 5.3e-128 461.8 382 58.1
Eucgr.G00612 Eucalyptus grandis HOM05D007403 ORTHO05D009306 1.2e-127 460.7 370 57.0
vmacro01773 Vaccinium macrocarpon HOM05D007403 ORTHO05D009306 4.5e-127 458.8 512 47.3
FvH4_5g30191 Fragaria vesca HOM05D007403 ORTHO05D009306 5.0e-126 455.3 405 55.3
Solyc01g104410.4 Solanum lycopersicum HOM05D007403 ORTHO05D009306 6.5e-126 454.9 404 55.7
Nitab4.5_0011920g0020 Nicotiana tabacum HOM05D007403 ORTHO05D009306 1.9e-125 453.4 385 57.1
A02p40120 Brassica napus HOM05D000219 ORTHO05D009306 6.1e-124 448.4 386 55.7
CiPaw.05G043100 Carya illinoinensis HOM05D007403 ORTHO05D009306 1.2e-116 424.1 279 66.7
Peaxi162Scf00011g00136 Petunia axillaris HOM05D007403 ORTHO05D009306 3.6e-116 422.5 404 53.5
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 1.8e-115 420.2 420 51.4
ATR1120G172 Amborella trichopoda HOM05D007403 ORTHO05D009306 1.1e-114 417.5 428 49.3
Sc06g0000280 Simmondsia chinensis HOM05D007403 ORTHO05D009306 3.7e-113 412.5 322 59.9
PSO210G5116 Papaver somniferum HOM05D007403 ORTHO05D009306 4.8e-113 412.1 403 51.6
unitig_27.g24942 Utricularia gibba HOM05D007403 ORTHO05D009306 2.0e-106 390.2 412 47.8
Phvul.006G212700 Phaseolus vulgaris HOM05D007403 ORTHO05D009306 1.3e-105 387.5 287 63.4
Rhsim11G0131100 Rhododendron simsii HOM05D007403 ORTHO05D009306 2.8e-105 386.3 397 51.1
SGA_v2.0_scaffold1G00325 Striga asiatica HOM05D007403 ORTHO05D009306 1.7e-102 377.1 445 47.2
Zm00001eb240350 Zea mays HOM05D007403 ORTHO05D009306 1.4e-99 367.5 316 55.1
PSO170G1442 Papaver somniferum HOM05D002224 ORTHO05D002446 9.1e-96 354.8 371 50.1
Pp3c9_24800 Physcomitrium patens HOM05D007403 ORTHO05D009306 9.1e-96 354.8 452 41.4
FAN08G0644 Fragaria x ananassa HOM05D007403 ORTHO05D009306 2.7e-95 353.2 443 46.5
CAN.G1352.31 Capsicum annuum HOM05D007403 ORTHO05D009306 3.4e-90 336.3 241 66.4
SEGI_20290 Sequoiadendron giganteum HOM05D007403 ORTHO05D009306 3.4e-90 336.3 332 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1532 Anthoceros agrestis HOM05D007403 ORTHO05D009306 3.7e-89 332.8 416 42.8
Gohir.A12G032700 Gossypium hirsutum HOM05D007403 ORTHO05D009306 4.1e-80 302.8 219 61.2
AUR62029925 Chenopodium quinoa HOM05D007403 ORTHO05D009306 1.5e-77 294.3 270 58.5
PGSC0003DMG400023750 Solanum tuberosum HOM05D007403 ORTHO05D009306 1.6e-76 290.8 219 61.6
SMO353G0333 Selaginella moellendorffii HOM05D007403 ORTHO05D009306 1.9e-72 277.3 421 40.1
Ah.12g060250 Amaranthus hybridus HOM05D007403 ORTHO05D009306 6.0e-71 272.3 405 40.0
Hma1.2p1_0557F.1_g178360 Hydrangea macrophylla HOM05D007403 ORTHO05D009306 2.1e-60 237.3 163 65.0
Ca_02259_v3 Cicer arietinum L. HOM05D007403 ORTHO05D009306 4.7e-60 236.1 194 59.3
SMO364G0780 Selaginella moellendorffii HOM05D007403 ORTHO05D009306 1.7e-57 227.6 399 36.6
Cpa.g.sc2.9 Carica papaya HOM05D007403 ORTHO05D009306 4.2e-56 223.0 241 50.2
Os02g0210800 Oryza sativa ssp. japonica HOM05D007403 ORTHO05D009306 9.3e-56 221.9 155 60.6
SEGI_38556 Sequoiadendron giganteum HOM05D007403 ORTHO05D009306 2.7e-55 220.3 237 46.4
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 1.6e-36 157.9 131 56.5
HPP92_020048 Vanilla planifolia HOM05D001327 ORTHO05D002270 2.4e-35 154.1 156 48.7
Haze_01630 Corylus avellana HOM05D007403 ORTHO05D009306 5.1e-30 136.3 190 44.7
Cre07.g317650 Chlamydomonas reinhardtii HOM05D007403 ORTHO05D009306 4.8e-28 129.8 334 27.5
CBR_g32500 Chara braunii HOM05D007403 ORTHO05D000800 2.5e-24 117.5 778 21.5
Psat1g137280 Pisum sativum HOM05D007403 ORTHO05D009306 1.3e-22 111.7 209 34.9
HPP92_020049 Vanilla planifolia HOM05D007403 ORTHO05D009306 1.6e-20 104.8 95 50.5
Cpa.g.sc2.8 Carica papaya HOM05D007403 ORTHO05D009306 1.6e-15 88.2 72 59.7
PRCOL_00000187 Prasinoderma coloniale HOM05D001336 ORTHO05D001211 3.7e-12 77.0 406 24.4
CAN.G1305.34 Capsicum annuum HOM05D007403 ORTHO05D009306 1.5e-10 71.6 72 51.4
Sc06g0000290 Simmondsia chinensis HOM05D007403 ORTHO05D009306 4.5e-10 70.1 57 54.4


User provided reference genes

Program Settings