Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 5.1e-218 760.8 379 100.0
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 7.0e-191 670.6 379 86.3
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 5.4e-159 564.7 379 71.0
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 3.5e-158 562.0 379 71.5
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.9e-156 556.2 379 70.2
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 6.2e-155 551.2 376 70.7
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 2.6e-153 545.8 375 69.1
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 2.9e-152 542.3 361 71.7
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 3.2e-151 538.9 377 67.1
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 4.1e-151 538.5 379 66.0
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 4.1e-151 538.5 376 67.6
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 1.6e-150 536.6 376 68.9
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 4.6e-150 535.0 379 66.5
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 2.3e-149 532.7 375 65.1
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.9e-149 531.9 379 66.8
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.9e-149 531.9 379 65.2
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 3.9e-149 531.9 377 68.7
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 8.6e-149 530.8 429 61.5
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.1e-148 530.4 379 65.2
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 4.3e-148 528.5 377 66.0
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 7.3e-148 527.7 377 65.8
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.2e-147 526.9 379 68.3
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 1.2e-147 526.9 375 66.1
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 2.1e-147 526.2 375 66.4
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.1e-147 526.2 377 65.8
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 2.1e-147 526.2 377 66.0
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 3.6e-147 525.4 377 65.8
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 4.0e-146 521.9 378 65.3
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 4.0e-146 521.9 379 63.9
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 5.2e-146 521.5 379 65.4
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 8.9e-146 520.8 377 64.7
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 8.9e-146 520.8 379 63.6
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 8.9e-146 520.8 377 66.0
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.2e-145 520.4 377 66.8
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 2.6e-145 519.2 375 65.6
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.4e-143 511.5 375 62.7
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 2.7e-142 509.2 375 62.4
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 6.0e-142 508.1 376 66.2
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.0e-142 508.1 375 62.1
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.0e-142 508.1 375 62.4
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 5.1e-141 505.0 377 64.7
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 6.6e-141 504.6 375 64.8
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 5.6e-140 501.5 372 64.0
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 3.6e-139 498.8 377 62.9
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 6.2e-139 498.0 377 62.1
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 8.1e-139 497.7 378 61.6
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.4e-138 496.1 385 60.0
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 4.0e-138 495.4 382 62.0
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 5.2e-138 495.0 377 61.3
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 5.2e-138 495.0 380 62.1
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 1.5e-137 493.4 379 61.7
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 1.5e-137 493.4 377 61.3
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 2.0e-137 493.0 379 61.5
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 3.4e-137 492.3 380 62.6
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 4.4e-137 491.9 379 62.3
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 4.4e-137 491.9 380 61.8
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 4.4e-137 491.9 379 62.5
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 7.6e-137 491.1 381 63.0
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.3e-136 490.3 380 61.8
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.7e-136 490.0 380 61.8
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 2.2e-136 489.6 380 60.3
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 2.9e-136 489.2 379 62.3
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 3.8e-136 488.8 380 61.8
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 3.8e-136 488.8 380 61.8
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 4.9e-136 488.4 379 61.2
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 6.4e-136 488.0 380 61.8
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 3.2e-135 485.7 377 59.9
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 5.4e-135 485.0 378 61.9
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 9.3e-135 484.2 377 60.7
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.2e-134 483.8 379 61.5
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 1.2e-134 483.8 376 59.8
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 2.1e-134 483.0 380 59.5
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 6.0e-134 481.5 377 62.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.7e-133 479.9 376 62.5
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 8.7e-133 477.6 381 59.6
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 3.3e-132 475.7 267 87.3
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 5.6e-132 474.9 364 63.7
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 9.6e-132 474.2 379 60.2
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 3.6e-131 472.2 380 57.6
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.2e-129 467.2 406 56.7
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 9.9e-129 464.2 375 61.1
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.1e-127 460.7 378 58.2
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 2.4e-127 459.5 379 59.6
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 2.7e-126 456.1 400 55.2
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.3e-125 453.8 379 58.0
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 3.0e-125 452.6 377 56.2
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 6.2e-123 444.9 379 57.3
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.0e-122 442.2 424 52.8
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 4.5e-121 438.7 377 55.7
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 7.6e-121 438.0 375 56.5
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 7.9e-118 427.9 316 65.2
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.9e-117 425.6 386 56.0
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 2.6e-113 412.9 371 53.1
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 6.7e-101 371.7 367 51.0
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 9.4e-95 351.3 273 61.2
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 9.4e-95 351.3 377 44.6
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 1.1e-90 337.8 404 46.8
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 1.2e-89 334.3 276 59.8
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 8.0e-78 295.0 187 72.7
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 5.2e-77 292.4 363 42.1
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 7.2e-71 271.9 264 55.3
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 6.3e-67 258.8 368 39.1
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 3.4e-52 209.9 115 92.2
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 3.0e-48 196.8 227 47.6
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 3.0e-48 196.8 227 47.6
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 4.7e-46 189.5 166 54.8
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 2.3e-45 187.2 166 54.8
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 4.4e-44 183.0 139 61.9
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 3.7e-43 179.9 135 65.2
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 8.3e-43 178.7 124 65.3
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.7e-40 171.0 112 65.2
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.2e-38 164.9 124 63.7
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 2.1e-30 137.5 153 51.6
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 1.8e-29 134.4 366 29.0
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.9e-27 127.1 110 62.7
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 1.2e-22 111.7 350 28.0
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 1.6e-17 94.7 82 58.5
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 5.6e-15 86.3 51 80.4
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 1.4e-13 81.6 51 78.4
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.4e-13 80.9 74 56.8
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 5.3e-13 79.7 57 64.9
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 4.5e-12 76.6 114 43.9
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 2.4e-10 70.9 102 43.1
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 2.1e-09 67.8 51 60.8
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.3e-08 64.3 45 66.7
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 5.1e-08 63.2 93 41.9
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 5.1e-08 63.2 51 58.8
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 1.9e-07 61.2 46 60.9


User provided reference genes

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