Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 5.9e-275 950.3 489 100.0
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 1.8e-215 752.7 490 78.4
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 6.8e-215 750.7 493 79.9
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 1.8e-191 672.9 487 70.8
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 2.2e-189 666.0 459 72.5
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 1.1e-188 663.7 481 70.7
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 2.5e-188 662.5 481 70.7
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 1.6e-187 659.8 487 69.6
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 8.7e-186 654.1 457 72.6
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 6.2e-184 647.9 468 69.4
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 9.0e-183 644.0 442 73.1
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 2.2e-181 639.4 458 71.2
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 2.5e-180 636.0 459 69.7
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 3.5e-179 632.1 473 67.4
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 3.9e-178 628.6 479 65.8
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 6.7e-178 627.9 453 71.3
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 1.1e-177 627.1 451 69.2
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 1.5e-177 626.7 462 69.0
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 1.5e-177 626.7 453 70.2
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 1.9e-177 626.3 463 68.9
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 2.5e-177 625.9 451 69.2
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 3.3e-177 625.5 460 68.7
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 9.7e-177 624.0 493 65.9
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 4.8e-176 621.7 487 65.5
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 1.1e-175 620.5 490 64.9
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 1.8e-175 619.8 485 66.4
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.8e-175 619.8 452 68.8
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 3.1e-175 619.0 450 71.8
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 4.1e-175 618.6 441 70.7
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 1.2e-174 617.1 462 67.5
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 1.2e-174 617.1 449 67.9
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 1.5e-174 616.7 444 69.6
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 1.5e-174 616.7 454 67.8
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 2.6e-174 615.9 459 68.0
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 2.6e-174 615.9 451 68.3
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 2.6e-174 615.9 448 68.5
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 5.0e-173 611.7 485 65.6
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 6.5e-173 611.3 453 68.2
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 1.1e-172 610.5 462 66.2
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 4.2e-172 608.6 462 68.0
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 1.6e-171 606.7 486 64.8
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 2.1e-171 606.3 450 68.0
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 2.7e-171 605.9 439 67.4
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 4.6e-171 605.1 455 66.8
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 7.4e-169 597.8 444 66.7
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 7.4e-169 597.8 444 66.7
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 9.7e-169 597.4 455 66.4
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.3e-168 597.0 460 65.2
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 3.7e-168 595.5 481 63.2
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 3.7e-168 595.5 460 65.4
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 8.2e-168 594.3 460 65.0
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 2.4e-167 592.8 462 66.5
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 6.9e-167 591.3 439 67.7
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 9.1e-167 590.9 435 66.7
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 2.6e-166 589.3 433 67.4
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 4.5e-166 588.6 468 64.5
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 1.3e-165 587.0 464 65.1
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 1.7e-165 586.6 464 64.7
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 1.7e-165 586.6 456 64.5
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 2.2e-165 586.3 435 66.4
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 3.8e-165 585.5 439 66.1
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 6.5e-165 584.7 446 65.9
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 6.5e-165 584.7 461 66.2
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 6.5e-165 584.7 435 68.0
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 8.5e-165 584.3 462 64.7
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 8.5e-165 584.3 462 64.9
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 3.2e-164 582.4 436 65.6
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 5.5e-164 581.6 452 67.3
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 1.2e-163 580.5 454 64.1
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 2.7e-163 579.3 456 64.5
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 7.9e-163 577.8 440 65.5
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 1.0e-162 577.4 431 65.7
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 6.7e-162 574.7 457 63.2
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 8.8e-162 574.3 453 65.8
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 2.0e-161 573.2 443 66.1
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 1.1e-159 567.4 452 64.8
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 1.1e-159 567.4 447 63.3
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 1.6e-158 563.5 455 62.4
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 7.7e-158 561.2 441 64.6
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 1.1e-153 547.4 464 60.3
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 4.4e-153 545.4 404 66.8
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 1.0e-149 534.3 429 61.1
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 1.5e-148 530.4 460 60.2
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 4.8e-144 515.4 488 55.7
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 1.4e-143 513.8 430 58.6
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 1.2e-139 500.7 449 56.6
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 1.6e-139 500.4 375 67.5
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 2.4e-135 486.5 429 56.9
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 5.6e-132 475.3 372 63.2
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 1.2e-121 441.0 459 52.3
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 1.1e-119 434.5 429 50.6
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 1.1e-114 417.9 429 51.3
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 5.2e-114 415.6 402 53.7
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 6.2e-107 392.1 303 68.0
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 3.4e-105 386.3 453 45.5
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 5.4e-103 379.0 420 48.3
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 4.0e-98 362.8 465 44.5
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 8.9e-98 361.7 450 46.4
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 2.9e-96 356.7 268 66.4
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.1e-84 318.2 314 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 7.9e-70 268.9 219 58.4
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 1.0e-69 268.5 189 69.3
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 2.2e-51 207.6 143 68.5
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 3.7e-51 206.8 148 64.9
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 4.0e-37 160.2 117 65.8
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 1.2e-25 122.1 109 53.2
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 2.8e-22 110.9 86 60.5
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.4e-10 72.0 476 20.8
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 3.2e-10 70.9 471 21.2
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 4.6e-09 67.0 486 20.8
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 1.3e-08 65.5 51 62.7
PSO135G0108 Papaver somniferum HOM05D002360 ORTHO05D006971 2.3e-08 64.7 470 19.6
SMO165G0055 Selaginella moellendorffii HOM05D007163 ORTHO05D009213 3.3e-07 60.8 177 28.2
arahy.Tifrunner.gnm1.ann1.YX4IN3 Arachis hypogaea HOM05D001254 ORTHO05D001386 7.3e-07 59.7 282 24.5
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 7.3e-07 59.7 176 26.1
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 9.5e-07 59.3 173 29.5
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 9.5e-07 59.3 173 28.3
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 1.2e-06 58.9 182 25.8
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 1.6e-06 58.5 173 27.2
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 2.1e-06 58.2 173 27.7
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 2.8e-06 57.8 173 27.7
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 2.8e-06 57.8 173 27.7
CDE06G2307 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 2.8e-06 57.8 460 20.9
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 3.6e-06 57.4 173 27.7
Nn3g16518 Nelumbo nucifera HOM05D007163 ORTHO05D009213 3.6e-06 57.4 177 25.4
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 8.0e-06 56.2 173 27.2
GSVIVG01020812001 Vitis vinifera HOM05D000461 ORTHO05D001840 8.0e-06 56.2 139 31.7


User provided reference genes

Program Settings