Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0337011 Helianthus annuus HOM05D003386 ORTHO05D004061 1.2e-74 283.1 140 100.0
HanXRQChr10g0295971 Helianthus annuus HOM05D003386 ORTHO05D004061 1.8e-51 206.1 116 91.4
Lsat_1_v5_gn_9_117420 Lactuca sativa HOM05D003386 ORTHO05D004061 7.4e-29 131.0 118 64.4
HanXRQChr03g0066951 Helianthus annuus HOM05D003386 ORTHO05D004061 7.1e-24 114.4 113 56.6
Nitab4.5_0001254g0040 Nicotiana tabacum HOM05D003386 ORTHO05D004061 3.9e-22 108.6 119 55.5
Nitab4.5_0000078g0070 Nicotiana tabacum HOM05D003386 ORTHO05D004061 6.7e-22 107.8 119 55.5
Sc14g0002680 Simmondsia chinensis HOM05D003386 ORTHO05D004061 1.6e-20 103.2 118 56.8
Actinidia28060 Actinidia chinensis HOM05D003386 ORTHO05D004061 4.8e-20 101.7 127 50.4
Peaxi162Scf00003g03625 Petunia axillaris HOM05D003386 ORTHO05D004061 1.8e-19 99.8 120 53.3
Lj5C241T2 Lonicera japonica HOM05D003386 ORTHO05D004061 4.0e-19 98.6 82 64.6
Solyc01g105060.3 Solanum lycopersicum HOM05D003386 ORTHO05D004061 6.9e-19 97.8 121 53.7
PGSC0003DMG400012564 Solanum tuberosum HOM05D003386 ORTHO05D004061 6.9e-19 97.8 121 53.7
CSS0046980 Camellia sinensis var. sinensis HOM05D003386 ORTHO05D004061 9.0e-19 97.4 126 50.0
Cc02_g21710 Coffea canephora HOM05D003386 ORTHO05D004061 9.0e-19 97.4 121 49.6
Ah.01g009650 Amaranthus hybridus HOM05D003386 ORTHO05D004061 2.0e-18 96.3 120 57.5
Dinv09045 Davidia involucrata HOM05D003386 ORTHO05D004061 2.0e-18 96.3 127 51.2
SGA_v2.0_scaffold45G17309 Striga asiatica HOM05D003386 ORTHO05D004061 2.0e-18 96.3 117 57.3
Sopen01g047590 Solanum pennellii HOM05D003386 ORTHO05D004061 4.5e-18 95.1 121 52.1
EL10Ac9g21474 Beta vulgaris HOM05D003386 ORTHO05D004061 5.8e-18 94.7 119 53.8
Medtr4g094265 Medicago truncatula HOM05D003386 ORTHO05D004061 7.6e-18 94.4 116 50.0
VMungo0540G1300 Vigna mungo HOM05D003386 ORTHO05D004061 1.0e-17 94.0 117 54.7
TPR.G10437 Trifolium pratense HOM05D003386 ORTHO05D004061 1.3e-17 93.6 113 55.8
AUR62010125 Chenopodium quinoa HOM05D003386 ORTHO05D004061 1.7e-17 93.2 82 64.6
Lj4g0024201 Lotus japonicus HOM05D003386 ORTHO05D004061 1.7e-17 93.2 119 51.3
CAN.G523.83 Capsicum annuum HOM05D003386 ORTHO05D004061 3.8e-17 92.0 110 50.0
Cpa.g.sc20.223 Carica papaya HOM05D003386 ORTHO05D004061 3.8e-17 92.0 112 52.7
Hund06384 Selenicereus undatus HOM05D003386 ORTHO05D004061 3.8e-17 92.0 120 50.8
vmacro01818 Vaccinium macrocarpon HOM05D003386 ORTHO05D004061 3.8e-17 92.0 123 47.2
MD08G1220800 Malus domestica HOM05D003386 ORTHO05D004061 4.9e-17 91.7 74 63.5
TAR381G0876 Trochodendron aralioides HOM05D003386 ORTHO05D004061 4.9e-17 91.7 129 48.8
MSTRG.5264 Avicennia marina HOM05D003386 ORTHO05D004061 6.5e-17 91.3 121 52.1
Prupe.1G557700 Prunus persica HOM05D003386 ORTHO05D004061 8.4e-17 90.9 123 48.8
MD15G1411500 Malus domestica HOM05D003386 ORTHO05D004061 1.1e-16 90.5 116 50.0
Psat7g097760 Pisum sativum HOM05D003386 ORTHO05D004061 1.1e-16 90.5 121 47.9
Rhsim11G0136000 Rhododendron simsii HOM05D003386 ORTHO05D004061 1.1e-16 90.5 119 47.9
Glyma.15G052500 Glycine max HOM05D003386 ORTHO05D004061 1.4e-16 90.1 116 54.3
Hma1.2p1_0522F.1_g171540 Hydrangea macrophylla HOM05D003386 ORTHO05D004061 1.4e-16 90.1 125 48.8
Phvul.006G207200 Phaseolus vulgaris HOM05D003386 ORTHO05D004061 1.9e-16 89.7 117 52.1
CANSAT11G0561 Cannabis sativa HOM05D003386 ORTHO05D004061 2.5e-16 89.4 71 64.8
SGA_v2.0_scaffold145G36039 Striga asiatica HOM05D003386 ORTHO05D004061 2.5e-16 89.4 118 51.7
Dinv24205 Davidia involucrata HOM05D003386 ORTHO05D004061 3.2e-16 89.0 125 51.2
Duzib187G1230 Durio zibethinus HOM05D003386 ORTHO05D004061 4.2e-16 88.6 113 48.7
FAN23G1173 Fragaria x ananassa HOM05D003386 ORTHO05D004061 4.2e-16 88.6 92 60.9
Hma1.2p1_1341F.1_g276850 Hydrangea macrophylla HOM05D003386 ORTHO05D004061 4.2e-16 88.6 125 48.8
MSTRG.27790 Avicennia marina HOM05D003386 ORTHO05D004061 5.5e-16 88.2 121 49.6
FvH4_1g21430 Fragaria vesca HOM05D003386 ORTHO05D004061 5.5e-16 88.2 115 53.9
FAN19G2648 Fragaria x ananassa HOM05D003386 ORTHO05D004061 5.5e-16 88.2 115 53.9
SalBow6G6318 Salvia bowleyana HOM05D003386 ORTHO05D004061 5.5e-16 88.2 121 50.4
GSVIVG01029788001 Vitis vinifera HOM05D003386 ORTHO05D004061 5.5e-16 88.2 108 49.1
arahy.Tifrunner.gnm1.ann1.Q99U9Q Arachis hypogaea HOM05D003386 ORTHO05D004061 7.1e-16 87.8 117 48.7
arahy.Tifrunner.gnm1.ann1.M024AA Arachis hypogaea HOM05D003386 ORTHO05D004061 9.3e-16 87.4 117 48.7
BcaB08g35050 Brassica carinata HOM05D003386 ORTHO05D004061 9.3e-16 87.4 115 47.8
Haze_10643 Corylus avellana HOM05D003386 ORTHO05D004061 9.3e-16 87.4 125 48.8
FAN26G2200 Fragaria x ananassa HOM05D003386 ORTHO05D004061 9.3e-16 87.4 115 53.0
THA.LOC104801700 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 9.3e-16 87.4 117 47.0
THA.LOC104818493 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 9.3e-16 87.4 117 47.0
AL4G11710 Arabidopsis lyrata HOM05D003386 ORTHO05D004061 1.2e-15 87.0 82 58.5
CiPaw.03G139400 Carya illinoinensis HOM05D003386 ORTHO05D004061 1.6e-15 86.7 109 52.3
GSVIVG01006370001 Vitis vinifera HOM05D003386 ORTHO05D004061 1.6e-15 86.7 152 42.8
Potri.003G020300 Populus trichocarpa HOM05D003386 ORTHO05D004061 2.1e-15 86.3 127 44.9
Prupe.6G180800 Prunus persica HOM05D003386 ORTHO05D004061 2.1e-15 86.3 79 60.8
Glyma.08G179900 Glycine max HOM05D003386 ORTHO05D004061 2.7e-15 85.9 116 51.7
CSS0037466 Camellia sinensis var. sinensis HOM05D003386 ORTHO05D004061 3.5e-15 85.5 122 45.1
Cfa005625 Carpinus fangiana HOM05D003386 ORTHO05D004061 3.5e-15 85.5 125 48.0
Manes.01G139400 Manihot esculenta HOM05D003386 ORTHO05D004061 3.5e-15 85.5 127 44.9
Sabra03G0011700 Salix brachista HOM05D003386 ORTHO05D004061 3.5e-15 85.5 128 44.5
TPR.G13597 Trifolium pratense HOM05D003386 ORTHO05D004061 3.5e-15 85.5 116 49.1
Ciclev10029222m.g Citrus clementina HOM05D003386 ORTHO05D004061 4.6e-15 85.1 116 49.1
Nn1g05283 Nelumbo nucifera HOM05D003386 ORTHO05D004061 4.6e-15 85.1 116 45.7
Peaxi162Scf00001g00026 Petunia axillaris HOM05D003386 ORTHO05D004061 4.6e-15 85.1 121 47.1
Migut.B00624 Erythranthe guttata HOM05D003386 ORTHO05D004061 6.0e-15 84.7 122 49.2
MBI05_g00407_MAGBIO Magnolia biondii HOM05D003386 ORTHO05D004061 6.0e-15 84.7 119 46.2
QL11p019866 Quercus lobata HOM05D003386 ORTHO05D004061 6.0e-15 84.7 120 48.3
Atru.chr4.164 Acer truncatum HOM05D003386 ORTHO05D004061 7.9e-15 84.3 79 62.0
BraA02t05021Z Brassica rapa HOM05D003386 ORTHO05D004061 7.9e-15 84.3 77 58.4
Eucgr.I02676 Eucalyptus grandis HOM05D003386 ORTHO05D004061 7.9e-15 84.3 85 55.3
Thhalv10014496m.g Eutrema salsugineum HOM05D003386 ORTHO05D004061 7.9e-15 84.3 115 47.8
Sabra01G0162100 Salix brachista HOM05D003386 ORTHO05D004061 7.9e-15 84.3 126 40.5
THA.LOC104824866 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 7.9e-15 84.3 73 61.6
A02p00360 Brassica napus HOM05D003386 ORTHO05D004061 1.0e-14 84.0 81 56.8
BolC2t06394H Brassica oleracea HOM05D003386 ORTHO05D004061 1.0e-14 84.0 81 56.8
Carub.0004s0137 Capsella rubella HOM05D003386 ORTHO05D004061 1.0e-14 84.0 71 59.2
CARHR113420 Cardamine hirsuta HOM05D003386 ORTHO05D004061 1.0e-14 84.0 74 60.8
MBI06_g27496_MAGBIO Magnolia biondii HOM05D003386 ORTHO05D004061 1.0e-14 84.0 104 49.0
PGR142G1162 Punica granatum HOM05D003386 ORTHO05D004061 1.0e-14 84.0 91 53.8
Aa31LG3G16980 Aethionema arabicum HOM05D003386 ORTHO05D004061 1.3e-14 83.6 97 50.5
BraA03t09789Z Brassica rapa HOM05D003386 ORTHO05D004061 1.3e-14 83.6 115 45.2
Lalb_Chr20g0123071 Lupinus albus HOM05D003386 ORTHO05D004061 1.3e-14 83.6 117 49.6
AL6G20650 Arabidopsis lyrata HOM05D003386 ORTHO05D004061 1.8e-14 83.2 77 55.8
Gohir.D03G043300 Gossypium hirsutum HOM05D003386 ORTHO05D004061 1.8e-14 83.2 107 53.3
Gorai.003G044400 Gossypium raimondii HOM05D003386 ORTHO05D004061 1.8e-14 83.2 107 53.3
GSVIVG01006367001 Vitis vinifera HOM05D003386 ORTHO05D004061 1.8e-14 83.2 119 46.2
A03p04440 Brassica napus HOM05D003386 ORTHO05D004061 2.3e-14 82.8 115 45.2
Carub.0006s0862 Capsella rubella HOM05D003386 ORTHO05D004061 2.3e-14 82.8 94 50.0
TAR625G0989 Trochodendron aralioides HOM05D003386 ORTHO05D004061 2.3e-14 82.8 126 47.6
Haze_24971 Corylus avellana HOM05D003386 ORTHO05D004061 3.0e-14 82.4 106 50.0
CsaV3_4G004790 Cucumis sativus L. HOM05D003386 ORTHO05D004061 3.0e-14 82.4 110 51.8
Duzib264G1262 Durio zibethinus HOM05D003386 ORTHO05D004061 3.0e-14 82.4 109 49.5
ECA234G2237 Erigeron canadensis HOM05D003386 ORTHO05D004061 3.0e-14 82.4 58 69.0
Gohir.A02G132000 Gossypium hirsutum HOM05D003386 ORTHO05D004061 3.0e-14 82.4 107 53.3
AT2G22230 Arabidopsis thaliana HOM05D003386 ORTHO05D004061 3.9e-14 82.0 114 47.4
AT5G10160 Arabidopsis thaliana HOM05D003386 ORTHO05D004061 3.9e-14 82.0 77 54.5
BcaB01g05546 Brassica carinata HOM05D003386 ORTHO05D004061 3.9e-14 82.0 115 44.3
C02p04300 Brassica napus HOM05D003386 ORTHO05D004061 3.9e-14 82.0 81 55.6
C03p04930 Brassica napus HOM05D003386 ORTHO05D004061 3.9e-14 82.0 115 44.3
BolC3t13024H Brassica oleracea HOM05D003386 ORTHO05D004061 3.9e-14 82.0 115 44.3
QL06p050185 Quercus lobata HOM05D003386 ORTHO05D004061 3.9e-14 82.0 79 57.0
RcHm_v2.0_Chr2g0115241 Rosa chinensis HOM05D003386 ORTHO05D004061 3.9e-14 82.0 115 49.6
Thhalv10000316m.g Eutrema salsugineum HOM05D003386 ORTHO05D004061 5.1e-14 81.6 73 56.2
Atru.chr6.1131 Acer truncatum HOM05D003386 ORTHO05D004061 6.7e-14 81.3 114 47.4
Aqoxy6G00575 Aquilegia oxysepala HOM05D003386 ORTHO05D004061 8.7e-14 80.9 128 43.8
AL1G57760 Arabidopsis lyrata HOM05D003386 ORTHO05D004061 8.7e-14 80.9 109 47.7
BraA09t41163Z Brassica rapa HOM05D003386 ORTHO05D004061 8.7e-14 80.9 71 60.6
MELO3C017583.2 Cucumis melo HOM05D003386 ORTHO05D004061 8.7e-14 80.9 111 52.3
MD00G1064800 Malus domestica HOM05D003386 ORTHO05D004061 8.7e-14 80.9 117 47.9
Thecc.01G105400 Theobroma cacao HOM05D003386 ORTHO05D004061 8.7e-14 80.9 116 45.7
BraA04t17306Z Brassica rapa HOM05D003386 ORTHO05D004061 1.1e-13 80.5 73 54.8
Glyma.05G118800 Glycine max HOM05D003386 ORTHO05D004061 1.1e-13 80.5 66 63.6
Sp4g01270 Schrenkiella parvula HOM05D003386 ORTHO05D004061 1.1e-13 80.5 116 44.0
Sp6g33240 Schrenkiella parvula HOM05D003386 ORTHO05D004061 1.1e-13 80.5 115 43.5
THA.LOC104799058 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 1.1e-13 80.5 110 47.3
COL.COLO4_09923 Corchorus olitorius HOM05D003386 ORTHO05D004061 1.5e-13 80.1 50 76.0
PSO782G5312 Papaver somniferum HOM05D003386 ORTHO05D004061 1.5e-13 80.1 112 47.3
A04p16740 Brassica napus HOM05D003386 ORTHO05D004061 1.9e-13 79.7 73 54.8
CARHR203130 Cardamine hirsuta HOM05D003386 ORTHO05D004061 2.5e-13 79.3 84 53.6
CiPaw.05G037800 Carya illinoinensis HOM05D003386 ORTHO05D004061 2.5e-13 79.3 115 45.2
Aqoxy3G02117 Aquilegia oxysepala HOM05D003386 ORTHO05D004061 3.3e-13 79.0 98 45.9
PGR102G0128 Punica granatum HOM05D003386 ORTHO05D004061 3.3e-13 79.0 107 53.3
BcaC02g08725 Brassica carinata HOM05D003386 ORTHO05D004061 7.4e-13 77.8 85 50.6
BolC4t26719H Brassica oleracea HOM05D003386 ORTHO05D004061 7.4e-13 77.8 85 50.6
Phvul.002G207600 Phaseolus vulgaris HOM05D003386 ORTHO05D004061 7.4e-13 77.8 121 45.5
C04p51290 Brassica napus HOM05D003386 ORTHO05D004061 9.6e-13 77.4 112 42.9
Haze_24967 Corylus avellana HOM05D003386 ORTHO05D004061 9.6e-13 77.4 106 49.1
PSO063G7399 Papaver somniferum HOM05D003386 ORTHO05D004061 9.6e-13 77.4 113 46.0
TWI14G0727 Tripterygium wilfordii HOM05D003386 ORTHO05D004061 9.6e-13 77.4 127 44.1
arahy.Tifrunner.gnm1.ann1.JC4ZCG Arachis hypogaea HOM05D003386 ORTHO05D004061 2.1e-12 76.3 65 63.1
arahy.Tifrunner.gnm1.ann1.KP3Y1K Arachis hypogaea HOM05D003386 ORTHO05D004061 2.8e-12 75.9 92 48.9
Mapoly0022s0038 Marchantia polymorpha HOM05D003386 ORTHO05D004061 2.8e-12 75.9 56 66.1
Ca_00128_v3 Cicer arietinum L. HOM05D003386 ORTHO05D004061 3.7e-12 75.5 114 45.6
TWI14G0589 Tripterygium wilfordii HOM05D003386 ORTHO05D004061 3.7e-12 75.5 127 42.5
CANSAT01G2072 Cannabis sativa HOM05D003386 ORTHO05D004061 4.8e-12 75.1 105 44.8
CDE05G1762 Ceratophyllum demersum HOM05D003386 ORTHO05D004061 4.8e-12 75.1 60 61.7
PSO133G0027 Papaver somniferum HOM05D003386 ORTHO05D004061 6.3e-12 74.7 113 46.9
Gohir.A10G085700 Gossypium hirsutum HOM05D003386 ORTHO05D004061 1.1e-11 73.9 104 47.1
CDE05G2354 Ceratophyllum demersum HOM05D003386 ORTHO05D004061 1.8e-11 73.2 60 61.7
Gorai.011G112700 Gossypium raimondii HOM05D003386 ORTHO05D004061 1.8e-11 73.2 104 46.2
Gohir.D10G102800 Gossypium hirsutum HOM05D003386 ORTHO05D004061 4.1e-11 72.0 106 45.3
Sed0010363 Sechium edule HOM05D003386 ORTHO05D004061 5.3e-11 71.6 80 53.8
Ca_18341_v3 Cicer arietinum L. HOM05D003386 ORTHO05D004061 6.9e-11 71.2 118 45.8
Os05g0435700 Oryza sativa ssp. japonica HOM05D003386 ORTHO05D004061 9.0e-11 70.9 94 43.6
Pp3c23_11330 Physcomitrium patens HOM05D003386 ORTHO05D004061 9.0e-11 70.9 48 70.8
ATR0564G495 Amborella trichopoda HOM05D003386 ORTHO05D004061 1.5e-10 70.1 56 60.7
RcHm_v2.0_Chr7g0226301 Rosa chinensis HOM05D003386 ORTHO05D004061 2.0e-10 69.7 61 57.4
Atru.chr4.151 Acer truncatum HOM05D003386 ORTHO05D004061 2.6e-10 69.3 41 80.5
Pp3c14_8480 Physcomitrium patens HOM05D003386 ORTHO05D004061 2.6e-10 69.3 63 58.7
AUR62013121 Chenopodium quinoa HOM05D003386 ORTHO05D004061 3.4e-10 68.9 43 74.4
BolC8t51657H Brassica oleracea HOM05D007232 ORTHO05D000652 7.6e-10 67.8 73 54.8
Zm00001eb348600 Zea mays HOM05D003386 ORTHO05D004061 7.6e-10 67.8 56 60.7
AagrBONN_evm.TU.Sc2ySwM_362.2717 Anthoceros agrestis HOM05D003386 ORTHO05D004061 1.0e-09 67.4 46 69.6
A09p57700 Brassica napus HOM05D003386 ORTHO05D004061 1.0e-09 67.4 42 76.2
CBR_g26519 Chara braunii HOM05D003386 ORTHO05D004061 1.0e-09 67.4 64 46.9
Zm00001eb170970 Zea mays HOM05D003386 ORTHO05D004061 1.0e-09 67.4 49 65.3
ClCG07G009490 Citrullus lanatus HOM05D003386 ORTHO05D004061 1.7e-09 66.6 120 43.3
DCAR_021850 Daucus carota HOM05D003386 ORTHO05D004061 1.7e-09 66.6 100 47.0
Nn5g29041 Nelumbo nucifera HOM05D003386 ORTHO05D004061 2.9e-09 65.9 41 78.0
Pp3c24_9920 Physcomitrium patens HOM05D003386 ORTHO05D004061 5.0e-09 65.1 88 45.5
Os08g0225000 Oryza sativa ssp. japonica HOM05D003386 ORTHO05D004061 6.5e-09 64.7 71 49.3
Glyma.08G073900 Glycine max HOM05D003386 ORTHO05D004061 2.5e-08 62.8 41 70.7
PSO719G0001 Papaver somniferum HOM05D003386 ORTHO05D004061 2.5e-08 62.8 99 43.4
SEGI_14878 Sequoiadendron giganteum HOM05D003386 ORTHO05D004061 5.5e-08 61.6 38 71.1
SMO340G0249 Selaginella moellendorffii HOM05D003386 ORTHO05D004061 1.6e-07 60.1 38 68.4
unitig_8.g3472 Utricularia gibba HOM05D003569 ORTHO05D004178 2.7e-07 59.3 73 47.9
CARHR113430 Cardamine hirsuta HOM05D003386 ORTHO05D004061 4.6e-07 58.5 42 66.7
Medtr2g008620 Medicago truncatula HOM05D003386 ORTHO05D004061 4.6e-07 58.5 34 82.4
Cfa002693 Carpinus fangiana HOM05D003386 ORTHO05D004061 2.3e-06 56.2 106 43.4
FvH4_5g28372 Fragaria vesca HOM05D003386 ORTHO05D025427 2.3e-06 56.2 63 47.6


User provided reference genes

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