Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.9e-209 732.3 367 100.0
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 3.7e-128 462.2 378 65.9
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.5e-121 440.3 378 64.6
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 4.6e-115 418.7 379 61.7
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 5.7e-113 411.8 379 60.4
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.1e-112 409.8 380 60.0
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 2.4e-111 406.4 378 59.8
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 2.0e-110 403.3 380 59.2
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 8.5e-109 397.9 380 57.9
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-108 397.5 380 59.5
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 3.2e-108 396.0 361 60.7
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 5.5e-108 395.2 380 58.7
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 9.3e-108 394.4 379 58.8
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 1.2e-107 394.0 380 58.2
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 2.1e-107 393.3 380 57.6
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 2.1e-107 393.3 379 58.8
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 2.7e-107 392.9 433 53.3
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 3.6e-107 392.5 380 56.6
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.3e-106 390.6 380 58.9
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 3.9e-106 389.0 380 56.3
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 5.1e-106 388.7 380 56.3
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 2.5e-105 386.3 379 57.8
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.3e-105 386.0 379 56.5
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 3.3e-105 386.0 380 55.8
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 4.3e-105 385.6 377 56.2
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.3e-105 385.6 379 56.5
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 5.7e-105 385.2 379 56.2
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 1.3e-104 384.0 353 56.7
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.6e-104 383.6 380 56.8
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 1.6e-104 383.6 377 56.8
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.2e-104 383.3 377 57.6
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 3.7e-104 382.5 380 56.1
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 4.8e-104 382.1 379 56.7
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 1.1e-103 380.9 380 55.3
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.1e-103 380.9 377 57.3
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.4e-103 380.6 379 56.5
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.8e-103 380.2 380 56.8
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 1.8e-103 380.2 380 56.1
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.8e-103 380.2 378 55.8
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 4.1e-103 379.0 380 55.5
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 4.1e-103 379.0 378 55.8
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 5.3e-103 378.6 379 57.5
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 9.1e-103 377.9 380 54.2
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 9.1e-103 377.9 380 55.8
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 9.1e-103 377.9 375 56.8
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 1.5e-102 377.1 378 55.8
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.5e-102 377.1 380 56.1
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.0e-102 376.7 380 56.1
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 2.6e-102 376.3 351 57.5
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.7e-101 373.6 375 57.6
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.8e-101 372.5 380 53.7
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 3.8e-101 372.5 379 55.9
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.0e-101 372.1 377 56.2
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 5.0e-101 372.1 379 57.0
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 2.5e-100 369.8 377 55.4
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 2.5e-100 369.8 385 55.3
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 4.2e-100 369.0 380 55.0
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 7.2e-100 368.2 375 55.5
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.6e-99 367.1 380 55.8
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 1.6e-99 367.1 380 53.9
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.1e-99 366.7 376 54.0
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 2.7e-99 366.3 380 55.5
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 2.7e-99 366.3 380 53.4
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 7.9e-99 364.8 380 53.2
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.4e-98 364.0 378 54.5
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.4e-98 364.0 380 54.5
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.8e-98 363.6 380 53.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 2.3e-98 363.2 380 53.7
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 5.1e-98 362.1 379 53.0
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 6.7e-98 361.7 379 54.6
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 1.5e-97 360.5 380 53.4
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 2.0e-97 360.1 380 53.7
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.0e-97 360.1 378 54.0
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 2.6e-97 359.8 379 53.8
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 2.6e-97 359.8 380 52.9
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 5.7e-97 358.6 379 54.4
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.7e-97 358.6 378 54.2
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 5.7e-97 358.6 386 53.9
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.3e-96 357.5 378 53.7
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.7e-96 357.1 380 54.5
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 2.2e-96 356.7 380 54.2
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 3.7e-96 355.9 380 53.9
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 4.8e-96 355.5 379 52.2
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.8e-96 355.5 377 53.3
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 4.8e-96 355.5 406 50.0
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 6.3e-96 355.1 381 52.5
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 1.1e-95 354.4 379 54.4
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.8e-95 353.6 380 54.7
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 1.8e-95 353.6 376 53.7
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 3.1e-95 352.8 381 52.2
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 5.3e-95 352.1 402 52.0
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 6.9e-95 351.7 380 53.7
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 1.2e-94 350.9 379 51.5
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.0e-94 350.1 360 53.6
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.0e-94 350.1 379 52.2
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.5e-94 349.0 372 53.8
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 7.7e-94 348.2 379 51.5
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.0e-93 347.8 353 54.4
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.7e-93 347.1 380 52.6
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 3.8e-93 345.9 366 52.2
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 5.0e-93 345.5 379 52.2
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.0e-93 345.5 380 51.6
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 8.5e-93 344.7 376 51.6
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.1e-92 344.4 380 52.1
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.2e-92 342.8 341 56.9
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 2.1e-91 340.1 379 52.8
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 2.7e-91 339.7 367 51.8
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 3.6e-91 339.3 373 51.7
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 8.8e-90 334.7 382 50.5
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 2.0e-89 333.6 372 51.1
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 2.0e-89 333.6 379 50.7
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.6e-89 333.2 379 50.4
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.3e-89 332.8 379 52.8
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 7.4e-89 331.6 366 51.4
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.8e-88 329.7 372 52.4
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 8.2e-88 328.2 380 48.9
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 8.2e-88 328.2 344 55.2
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 5.3e-87 325.5 386 50.5
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 5.3e-87 325.5 380 50.8
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.6e-86 323.9 361 51.0
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 2.0e-86 323.6 353 51.6
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 2.6e-86 323.2 380 51.3
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 3.5e-86 322.8 378 48.1
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.5e-86 322.8 379 52.2
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 5.9e-86 322.0 385 47.0
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 3.0e-82 309.7 377 46.2
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 6.3e-80 302.0 340 50.3
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.1e-79 301.2 340 50.0
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 1.4e-79 300.8 340 50.0
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.6e-78 297.4 375 48.0
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 2.2e-77 293.5 325 50.2
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 2.2e-77 293.5 370 47.0
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 5.0e-77 292.4 325 49.8
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 5.0e-77 292.4 325 49.8
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 6.5e-77 292.0 378 45.0
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.5e-76 290.8 372 47.6
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.2e-76 289.7 342 50.9
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 9.4e-76 288.1 341 49.6
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 2.7e-75 286.6 330 49.7
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 6.3e-72 275.4 291 53.3
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.8e-71 273.9 381 44.9
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 3.1e-71 273.1 332 45.8
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 7.2e-68 261.9 306 50.3
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 9.2e-63 245.0 364 42.6
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 2.7e-62 243.4 295 47.8
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.6e-60 235.7 327 45.3
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-58 231.5 245 52.2
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 6.0e-54 215.7 372 37.9
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 1.7e-48 197.6 245 47.8
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 2.0e-46 190.7 293 42.0
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.9e-45 186.4 156 66.0
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 4.1e-39 166.4 306 38.6
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 1.2e-38 164.9 223 42.6
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.3e-37 161.4 167 50.9
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 3.0e-37 160.2 331 36.3
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 5.2e-26 122.9 136 47.8
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 7.6e-25 119.0 85 67.1
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-22 111.3 78 69.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-22 110.9 78 69.2
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.3e-21 108.2 77 66.2
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.1e-19 99.0 197 39.1
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-16 91.3 143 41.3
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 5.4e-15 86.3 220 32.7
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 1.1e-12 78.6 96 42.7
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.4e-10 71.6 134 35.8
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.9e-07 61.2 53 56.6
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 9.3e-07 58.9 52 55.8
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.7e-06 57.4 51 52.9


User provided reference genes

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