Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 3.7e-140 501.5 252 100.0
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 7.8e-138 493.8 252 98.4
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.0e-137 493.4 252 98.0
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 9.8e-133 476.9 252 93.3
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.3e-132 476.5 252 92.9
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.4e-131 473.0 252 93.3
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 5.4e-131 471.1 252 92.5
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 6.0e-130 467.6 252 89.7
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 7.8e-130 467.2 252 90.1
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.5e-128 462.2 252 88.5
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.5e-128 462.2 252 88.5
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.3e-128 461.8 252 88.5
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 7.3e-128 460.7 250 90.0
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 9.5e-128 460.3 252 88.9
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.6e-127 459.5 252 87.7
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 3.6e-127 458.4 272 85.3
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 6.2e-127 457.6 249 89.2
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 5.2e-126 454.5 250 88.4
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 5.2e-126 454.5 252 87.7
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 1.5e-125 453.0 252 87.7
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 2.6e-125 452.2 249 88.0
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.6e-125 452.2 251 87.6
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 4.4e-125 451.4 250 88.0
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 4.4e-125 451.4 250 88.0
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 4.4e-125 451.4 252 86.9
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 9.9e-125 450.3 249 86.7
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.9e-124 448.0 244 90.6
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 6.4e-124 447.6 250 87.6
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 8.3e-124 447.2 250 86.0
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 8.3e-124 447.2 250 88.0
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.1e-123 446.8 244 89.3
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.9e-123 446.0 251 86.1
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.9e-123 446.0 247 87.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.9e-123 446.0 247 87.9
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.9e-123 446.0 250 87.6
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 88.5
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.4e-123 445.7 250 85.6
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 2.4e-123 445.7 249 86.3
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 3.2e-123 445.3 251 87.6
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 3.2e-123 445.3 250 86.0
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 3.2e-123 445.3 250 86.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 3.2e-123 445.3 244 87.7
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 4.1e-123 444.9 249 86.3
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 4.1e-123 444.9 250 86.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 4.1e-123 444.9 250 85.6
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 4.1e-123 444.9 250 85.6
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 5.4e-123 444.5 247 87.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 5.4e-123 444.5 247 87.4
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.4e-123 444.5 252 87.7
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 7.1e-123 444.1 252 86.1
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 2.1e-122 442.6 249 86.3
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.1e-122 442.6 244 88.5
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.1e-122 442.6 247 88.3
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 2.7e-122 442.2 247 87.0
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 3.5e-122 441.8 250 85.6
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 6.0e-122 441.0 247 88.7
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.0e-121 440.3 250 84.8
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.0e-121 440.3 270 82.6
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.3e-121 439.9 258 83.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 1.3e-121 439.9 249 85.5
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.7e-121 439.5 247 88.3
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 2.3e-121 439.1 251 84.9
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.9e-121 438.3 255 83.5
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 8.6e-121 437.2 250 84.4
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.5e-120 436.4 233 92.7
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 2.5e-120 435.6 250 84.8
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 3.3e-120 435.3 250 84.4
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 4.3e-120 434.9 247 86.6
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.2e-119 433.3 250 83.2
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.2e-119 433.3 250 83.2
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.2e-119 433.3 249 83.5
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.6e-119 433.0 250 82.8
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.1e-119 432.6 250 83.2
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.1e-119 432.6 250 83.2
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.1e-119 432.6 250 84.0
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 3.6e-119 431.8 250 82.8
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 3.6e-119 431.8 250 82.4
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 8.1e-119 430.6 250 82.8
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 8.1e-119 430.6 250 82.8
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.1e-118 430.3 243 86.8
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.4e-118 429.9 250 82.8
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 2.4e-118 429.1 236 86.9
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 2.4e-118 429.1 296 75.0
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 6.8e-118 427.6 250 82.0
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 2.0e-117 426.0 250 82.4
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.4e-116 421.0 247 82.2
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 8.4e-116 420.6 231 87.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 8.4e-116 420.6 252 81.3
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 1.6e-114 416.4 257 82.5
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.0e-113 413.7 297 70.4
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.1e-112 410.2 247 82.2
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 5.6e-112 407.9 363 61.2
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.4e-110 403.3 249 78.7
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.4e-109 398.7 249 77.5
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 6.4e-108 394.4 244 77.0
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.3e-103 380.2 242 74.8
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 2.8e-103 379.0 222 80.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 3.6e-103 378.6 248 74.6
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.7e-100 369.8 239 76.6
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 2.2e-100 369.4 213 84.5
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.9e-99 366.3 250 74.4
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.6e-98 363.2 251 71.3
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 2.5e-96 355.9 251 72.1
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 4.3e-96 355.1 237 73.8
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.8e-89 333.2 206 80.1
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.9e-89 332.0 249 64.7
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.8e-86 323.2 194 83.0
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 2.0e-85 319.7 183 82.0
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.4e-83 313.5 325 53.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 3.0e-81 305.8 187 80.7
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.5e-75 286.2 240 56.2
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.8e-73 280.0 209 66.5
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.1e-73 278.5 151 90.7
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 1.7e-71 273.5 184 72.3
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 2.5e-67 259.6 211 66.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 8.8e-65 251.1 152 77.6
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 2.2e-63 246.5 198 64.1
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 2.8e-63 246.1 249 49.4
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.2e-58 230.7 247 54.3
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.3e-54 215.3 130 83.1
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.3e-49 199.9 113 86.7
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.0e-49 199.1 99 97.0
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 7.0e-46 188.3 249 43.8
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.7e-42 176.4 99 81.8
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 5.2e-41 172.2 99 79.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.2e-39 166.8 158 61.4
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 6.3e-39 165.2 99 78.8
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.4e-38 164.1 253 35.2
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.0e-36 157.9 99 76.8
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.4e-30 137.5 128 59.4
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 5.8e-24 115.5 103 63.1
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.7e-18 95.9 64 67.2
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 3.7e-15 86.3 137 44.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 5.4e-14 82.4 44 81.8
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.2e-13 81.3 55 72.7
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.7e-12 77.4 56 67.9
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.2e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 7.6e-08 62.0 55 63.6


User provided reference genes

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