Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 2.7e-206 721.8 383 100.0
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.3e-123 444.9 374 67.4
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 3.2e-111 406.0 360 65.8
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.5e-97 359.0 383 57.7
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 5.0e-96 355.5 376 56.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 9.8e-92 341.3 373 55.0
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.3e-91 340.9 384 53.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 2.2e-91 340.1 379 56.5
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.4e-90 337.4 382 55.5
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 7.0e-90 335.1 395 53.4
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 7.8e-89 331.6 379 55.7
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 5.0e-88 328.9 377 53.6
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 8.6e-88 328.2 380 52.9
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 9.5e-87 324.7 387 52.7
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 9.5e-87 324.7 403 51.4
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.2e-86 324.3 381 50.9
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 8.0e-86 321.6 376 52.7
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.0e-85 321.2 403 50.6
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.1e-85 319.7 390 52.8
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 8.9e-85 318.2 373 52.0
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.2e-84 317.8 391 50.9
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.5e-84 317.4 388 51.8
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.0e-84 317.0 381 52.5
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 2.6e-84 316.6 373 52.0
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 7.5e-84 315.1 387 53.5
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.3e-83 314.3 377 51.5
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 4.9e-83 312.4 396 49.0
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.1e-82 311.2 380 51.8
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.9e-82 310.5 378 49.5
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 2.4e-82 310.1 383 48.6
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 3.5e-81 306.2 384 49.7
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 7.8e-81 305.1 408 48.8
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 3.9e-80 302.8 376 49.5
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 8.6e-80 301.6 389 48.8
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 4.3e-79 299.3 388 47.4
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 2.8e-78 296.6 349 52.4
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.0e-77 292.7 398 46.7
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 2.0e-76 290.4 408 45.8
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 5.8e-76 288.9 374 49.2
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 5.8e-76 288.9 373 47.2
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 9.8e-76 288.1 402 46.3
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 3.7e-75 286.2 346 51.2
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 4.9e-75 285.8 247 61.9
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 8.3e-75 285.0 397 45.6
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.4e-74 284.3 337 50.7
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.9e-74 283.9 397 45.8
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 2.4e-74 283.5 396 48.2
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 7.1e-74 282.0 375 46.1
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.2e-73 281.2 385 49.1
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.2e-73 281.2 383 47.3
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.2e-73 281.2 211 68.2
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 2.1e-73 280.4 387 45.7
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 6.0e-73 278.9 246 61.8
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.0e-72 278.1 426 44.4
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.0e-72 278.1 276 56.2
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 2.3e-72 276.9 398 45.5
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 8.6e-72 275.0 221 67.0
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.1e-71 274.6 387 46.5
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 4.3e-71 272.7 383 43.6
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 4.3e-71 272.7 385 46.5
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 7.3e-71 271.9 356 48.0
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.2e-70 271.2 347 49.9
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.2e-70 271.2 348 50.3
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.1e-70 270.4 351 52.7
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 2.8e-70 270.0 254 58.3
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 3.6e-70 269.6 390 43.8
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.8e-69 267.3 406 45.8
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 3.1e-69 266.5 348 48.3
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 5.2e-69 265.8 346 48.8
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 8.9e-69 265.0 381 43.3
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 2.6e-68 263.5 413 42.9
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 2.2e-67 260.4 357 44.8
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 9.2e-66 255.0 373 43.4
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.2e-65 254.6 379 46.7
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 2.1e-65 253.8 396 42.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 3.5e-65 253.1 303 50.5
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.0e-64 251.5 367 45.2
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.3e-64 251.1 347 44.7
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.6e-64 248.8 234 62.8
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.5e-63 246.9 307 48.2
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 2.8e-62 243.4 429 40.8
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.4e-61 241.1 297 48.5
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 5.2e-61 239.2 375 40.5
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 6.8e-61 238.8 252 54.8
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.3e-59 234.6 379 42.5
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 1.7e-59 234.2 247 52.6
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.8e-59 233.0 436 38.8
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.9e-58 230.7 294 46.9
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 2.3e-56 223.8 436 37.6
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.5e-55 221.1 408 38.2
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 2.5e-55 220.3 254 51.2
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 2.5e-55 220.3 186 64.0
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 7.3e-55 218.8 248 51.6
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 6.2e-54 215.7 184 62.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.4e-53 214.5 248 51.2
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 3.1e-53 213.4 299 45.5
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 3.1e-53 213.4 299 45.5
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 3.1e-53 213.4 299 45.5
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.2e-52 211.5 395 40.8
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.0e-52 210.7 381 40.7
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.8e-52 209.1 340 43.2
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 8.4e-51 205.3 300 43.0
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.1e-50 204.9 378 40.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 1.4e-50 204.5 369 40.1
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 3.2e-50 203.4 344 43.3
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 7.1e-50 202.2 183 60.1
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 3.5e-49 199.9 281 48.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.6e-49 199.5 373 38.6
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 4.8e-46 189.5 241 45.6
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 6.2e-46 189.1 349 40.7
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 2.4e-45 187.2 335 37.6
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.1e-45 186.8 217 49.8
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 9.0e-45 185.3 263 45.2
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 9.0e-45 185.3 377 37.4
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.5e-44 183.0 183 55.7
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 9.9e-44 181.8 351 39.0
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.2e-43 180.6 279 41.2
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 4.2e-42 176.4 252 42.1
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 4.2e-42 176.4 339 39.2
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 2.1e-41 174.1 384 35.7
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 2.3e-40 170.6 193 50.8
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 9.6e-39 165.2 270 45.2
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.1e-37 161.8 266 42.5
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.4e-34 151.4 200 44.5
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 2.1e-33 147.5 259 43.2
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 8.7e-32 142.1 121 62.8
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 4.3e-31 139.8 167 51.5
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.1e-26 125.2 183 43.2
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 9.3e-26 122.1 203 41.4
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 8.7e-24 115.5 93 64.5
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.1e-23 115.2 85 65.9
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 2.5e-23 114.0 205 40.5
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.3e-22 111.7 116 57.8
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 4.1e-21 106.7 113 52.2
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 4.1e-21 106.7 84 63.1
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.5e-20 104.8 128 50.0
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.5e-20 104.8 128 50.0
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 2.0e-20 104.4 393 28.0
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 5.0e-19 99.8 233 36.5
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 5.0e-19 99.8 197 38.1
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 1.4e-18 98.2 81 56.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 5.7e-15 86.3 86 54.7
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 8.2e-14 82.4 66 62.1
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.4e-13 81.6 215 27.9
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 8.5e-11 72.4 82 51.2
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 9.4e-10 68.9 124 33.9
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.6e-09 68.2 55 61.8
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.1e-09 67.8 49 59.2
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 3.6e-09 67.0 83 42.2
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 1.0e-08 65.5 115 38.3
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 5.2e-08 63.2 154 33.1
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.1e-07 62.0 376 24.5


User provided reference genes

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