Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 0.0e+00 1761.5 890 100.0
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 0.0e+00 1422.1 871 80.9
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 0.0e+00 1419.1 875 81.4
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 4.6e-294 1014.6 871 57.9
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 8.5e-288 993.8 867 55.9
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 1.1e-287 993.4 869 56.6
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 2.5e-284 982.2 869 57.1
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 5.0e-280 968.0 837 57.9
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 6.5e-280 967.6 838 57.8
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 3.6e-278 961.8 866 54.7
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.0e-277 960.3 866 54.7
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 6.7e-277 957.6 866 55.8
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 2.6e-276 955.7 865 56.4
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 9.7e-276 953.7 864 54.9
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 4.1e-274 948.3 866 53.5
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 4.1e-274 948.3 877 54.2
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 5.0e-272 941.4 874 54.1
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 8.5e-272 940.6 925 52.9
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 1.5e-268 929.9 871 54.1
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 1.0e-264 917.1 912 52.2
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 1.7e-264 916.4 870 53.7
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 5.5e-263 911.4 874 51.6
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 2.3e-261 906.0 889 49.9
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 9.7e-260 900.6 893 51.2
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 8.2e-259 897.5 879 52.9
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 1.4e-258 896.7 733 59.3
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 1.8e-258 896.3 875 51.2
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 1.6e-257 893.3 867 51.9
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 1.7e-256 889.8 781 55.8
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 2.2e-256 889.4 870 51.5
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 1.6e-254 883.2 875 50.4
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 8.8e-253 877.5 875 50.3
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 2.0e-252 876.3 884 51.8
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 2.6e-252 875.9 872 50.6
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.7e-251 873.2 880 50.3
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 4.1e-250 868.6 874 50.3
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 7.0e-250 867.8 876 50.3
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 9.1e-250 867.5 867 50.9
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 4.5e-249 865.1 876 50.5
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 1.7e-248 863.2 869 50.1
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 2.2e-248 862.8 873 49.9
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 8.5e-248 860.9 873 49.7
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 1.1e-247 860.5 866 50.0
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 1.1e-247 860.5 881 51.4
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 9.5e-247 857.4 816 52.7
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 1.6e-246 856.7 865 50.6
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 1.6e-246 856.7 872 50.9
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 1.2e-244 850.5 871 51.1
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 2.6e-244 849.4 889 51.0
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 3.4e-244 849.0 866 49.8
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 1.2e-241 840.5 851 52.2
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 2.8e-238 829.3 787 52.2
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 4.0e-237 825.5 864 48.1
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 1.5e-236 823.5 872 48.2
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 6.4e-235 818.1 870 47.6
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 7.0e-234 814.7 879 47.4
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 2.0e-233 813.1 861 48.1
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 4.6e-233 812.0 879 47.2
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 2.5e-231 806.2 869 47.4
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 8.0e-230 801.2 740 54.5
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 1.1e-226 790.8 956 46.5
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 1.7e-224 783.5 878 46.9
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 1.1e-223 780.8 872 46.4
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 2.1e-222 776.5 866 45.7
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 6.2e-222 775.0 871 45.9
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 2.3e-221 773.1 947 46.1
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 3.4e-220 769.2 874 45.9
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 1.1e-213 747.7 787 49.0
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 1.5e-212 743.8 865 45.2
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 1.7e-211 740.3 881 44.9
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 1.7e-208 730.3 798 47.2
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 4.3e-207 725.7 881 43.7
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 9.6e-207 724.5 703 53.6
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 1.6e-201 707.2 902 42.6
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 3.2e-194 682.9 907 42.2
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 2.5e-191 673.3 835 43.5
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 7.4e-183 645.2 652 51.4
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 5.8e-180 635.6 650 51.2
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 5.5e-178 629.0 884 41.5
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 2.6e-159 567.0 925 37.2
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 3.3e-159 566.6 890 38.5
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 4.8e-158 562.8 858 38.2
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 2.3e-152 543.9 925 35.4
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 2.4e-141 507.3 802 37.7
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 1.5e-135 488.0 458 52.8
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 5.0e-131 473.0 496 50.2
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 2.3e-128 464.2 451 51.7
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 2.5e-122 444.1 415 56.1
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 1.4e-120 438.3 860 33.6
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 7.3e-114 416.0 478 49.0
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 4.4e-111 406.8 477 47.0
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 8.3e-110 402.5 397 51.6
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 3.3e-106 390.6 395 49.6
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 1.6e-97 361.7 584 37.5
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 3.2e-93 347.4 402 46.8
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.7e-86 325.1 409 44.0
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 1.6e-76 292.0 317 47.3
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 1.3e-73 282.3 428 37.6
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 5.3e-72 276.9 333 46.5
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 2.2e-70 271.6 192 74.0
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 2.2e-70 271.6 192 74.0
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 9.6e-66 256.1 220 60.9
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 6.7e-59 233.4 285 46.0
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 2.2e-54 218.4 212 49.1
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 8.8e-51 206.5 532 28.2
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 9.1e-48 196.4 202 47.5
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 1.6e-44 185.7 183 46.4
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 3.2e-37 161.4 223 40.8
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 3.2e-37 161.4 223 40.8
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 9.4e-37 159.8 164 48.2
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 1.2e-36 159.5 152 50.7
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 3.0e-35 154.8 249 37.8
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.4e-32 146.0 212 38.7
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 4.7e-28 131.0 181 39.8
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 3.7e-25 121.3 135 45.9
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 2.0e-23 115.5 92 54.3
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 2.7e-23 115.2 97 54.6
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 3.5e-23 114.8 97 56.7
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 7.7e-23 113.6 84 60.7
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 2.2e-22 112.1 93 58.1
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 5.0e-22 110.9 82 61.0
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 6.5e-22 110.5 90 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 8.0e-20 103.6 106 50.0
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 1.0e-19 103.2 102 47.1
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 4.0e-19 101.3 139 37.4
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 5.7e-18 97.4 122 40.2
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 7.5e-18 97.1 93 53.8
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 7.0e-16 90.5 93 52.7
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.2e-15 89.7 75 50.7
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 6.6e-14 84.0 179 35.2
SEGI_26698 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 8.0e-12 77.0 94 34.0
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 3.0e-11 75.1 136 35.3
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 3.4e-10 71.6 67 44.8
MD16G1253600 Malus domestica HOM05D005193 ORTHO05D006316 2.4e-08 65.5 52 59.6
Hund02002 Selenicereus undatus HOM05D005193 ORTHO05D006316 2.4e-08 65.5 60 51.7
SEGI_10601 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 4.1e-08 64.7 75 42.7
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.6e-07 62.8 54 63.0
SEGI_24122 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 1.6e-07 62.8 77 41.6
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 2.9e-06 58.5 76 40.8


User provided reference genes

Program Settings