Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 0.0e+00 1552.7 837 100.0
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 0.0e+00 1194.9 831 77.0
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 0.0e+00 1186.0 841 78.4
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 6.1e-288 994.2 842 68.6
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.1e-284 983.4 836 66.5
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-283 979.9 840 66.5
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.2e-281 971.5 833 65.4
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 9.7e-278 960.3 833 64.7
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 6.3e-277 957.6 842 65.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 4.1e-276 954.9 845 63.7
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 5.3e-276 954.5 853 64.7
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.9e-274 948.7 845 63.1
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 8.5e-274 947.2 850 61.6
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.6e-272 941.8 839 62.7
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.8e-271 939.5 835 63.5
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 3.0e-271 938.7 840 62.6
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 4.0e-271 938.3 837 63.0
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 8.8e-271 937.2 843 63.3
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.5e-270 936.4 839 62.6
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.0e-270 936.0 839 62.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 3.4e-270 935.3 844 61.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 2.2e-269 932.6 840 63.6
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 6.3e-269 931.0 834 63.3
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 7.0e-268 927.5 835 63.4
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 7.0e-268 927.5 842 62.2
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 9.1e-268 927.2 841 60.2
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.5e-267 925.2 839 61.3
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.5e-267 925.2 833 61.2
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 3.5e-267 925.2 838 61.5
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 5.9e-267 924.5 842 60.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.0e-266 923.7 839 60.9
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.9e-266 922.2 844 61.4
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 6.5e-266 921.0 841 59.9
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 8.6e-266 920.6 845 60.2
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.9e-265 919.5 842 61.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.9e-265 919.5 838 61.9
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 2.5e-265 919.1 839 60.4
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 4.2e-265 918.3 836 62.1
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.2e-264 916.8 839 61.0
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 2.1e-264 916.0 836 59.9
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.1e-264 916.0 835 60.1
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.0e-262 909.4 840 60.2
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.6e-262 909.1 841 59.5
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 2.6e-262 909.1 862 61.1
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 3.4e-262 908.7 847 61.3
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.4e-262 908.3 843 60.1
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 7.5e-262 907.5 839 61.3
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.7e-261 906.4 837 60.1
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.8e-261 905.6 840 60.0
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.7e-261 905.2 838 60.0
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.1e-260 903.7 838 60.6
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 4.1e-260 901.7 839 58.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.2e-259 900.2 833 59.9
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 2.7e-259 899.0 836 59.9
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.5e-259 898.7 840 59.0
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 7.8e-259 897.5 846 59.2
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 5.0e-258 894.8 842 60.6
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.8e-255 886.3 843 59.5
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.8e-255 886.3 843 58.6
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 3.7e-253 878.6 843 59.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 8.6e-250 867.5 838 59.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 3.3e-249 865.5 843 58.8
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 5.6e-249 864.8 836 58.7
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.2e-248 863.6 878 57.2
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.4e-246 855.1 835 58.9
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.1e-244 850.5 843 58.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.9e-244 849.7 844 58.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.5e-243 845.5 843 57.8
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.1e-241 840.5 847 59.6
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.2e-240 837.0 935 53.4
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.4e-238 828.6 835 58.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.3e-237 827.0 845 58.5
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 4.6e-235 818.5 837 53.5
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.8e-235 817.8 851 56.2
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.5e-233 813.5 829 55.5
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 2.5e-233 812.8 837 61.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 3.3e-233 812.4 834 55.4
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 3.3e-233 812.4 834 55.4
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.2e-232 810.4 839 56.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.2e-232 810.4 839 56.1
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.2e-232 810.4 844 54.4
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.6e-232 810.1 826 54.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.1e-231 805.8 833 54.9
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 4.0e-231 805.4 790 59.1
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.4e-230 802.4 847 54.0
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 8.4e-229 797.7 845 53.7
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.1e-228 797.3 843 54.1
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.5e-225 786.9 855 51.9
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 4.3e-225 785.4 853 52.5
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 7.3e-225 784.6 829 53.6
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 9.9e-222 774.2 841 54.2
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.9e-218 762.3 832 54.3
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 3.2e-212 742.7 843 51.6
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 5.8e-206 721.8 677 57.6
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.2e-204 716.1 843 52.3
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 7.1e-204 714.9 810 52.1
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.0e-203 711.8 840 49.5
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 3.3e-201 706.1 694 56.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.8e-194 683.7 614 59.3
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 3.0e-194 682.9 851 47.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.3e-183 645.6 550 63.1
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 7.9e-179 631.7 612 61.8
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.9e-173 613.2 618 59.7
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 4.8e-152 542.7 867 42.0
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-150 538.1 454 62.8
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 3.0e-138 496.9 797 42.2
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.1e-135 488.4 895 39.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.6e-131 474.6 841 39.7
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.4e-128 462.6 498 59.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.2e-126 458.4 372 63.4
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 6.4e-112 409.5 456 58.6
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.1e-111 408.7 395 59.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.0e-109 400.6 641 39.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-106 392.1 430 53.0
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.4e-106 391.0 308 66.2
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-98 365.5 289 66.1
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.6e-89 334.3 454 45.8
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 9.6e-84 315.8 339 57.2
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.9e-78 296.2 336 50.9
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 8.7e-77 292.7 233 64.4
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 8.7e-77 292.7 233 63.9
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 6.9e-74 283.1 200 72.0
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 4.5e-73 280.4 292 60.6
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 5.1e-69 266.9 829 30.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.5e-68 265.4 227 58.1
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.0e-64 252.7 157 80.9
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 3.3e-60 237.7 195 62.1
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.9e-56 224.6 276 53.6
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.4e-55 222.2 212 55.7
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.1e-46 190.3 182 54.9
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-44 186.0 153 62.1
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 4.4e-44 184.1 214 49.5
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.8e-37 162.2 172 52.9
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.2e-35 155.2 157 61.1
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.4e-34 151.8 179 48.6
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 4.1e-34 151.0 152 51.3
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 2.8e-30 138.3 648 25.6
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 4.4e-28 131.0 283 37.5
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 9.8e-28 129.8 114 63.2
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 7.0e-26 123.6 285 35.8
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 7.8e-25 120.2 292 34.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.3e-24 119.4 575 23.3
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.3e-24 119.4 105 59.0
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 6.6e-24 117.1 597 25.1
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 6.1e-22 110.5 71 69.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.4e-20 104.8 76 68.4
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 7.5e-20 103.6 118 50.0
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.3e-15 87.8 55 80.0
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 6.2e-14 84.0 105 51.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-13 83.2 197 42.1
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.4e-12 77.8 59 62.7
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 5.8e-12 77.4 62 66.1
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 9.8e-12 76.6 200 40.5
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 8.3e-11 73.6 197 39.1
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 8.3e-11 73.6 95 47.4
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.9e-10 72.4 55 61.8
ECA232G0241 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.5e-07 62.8 78 46.2
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-06 59.7 122 39.3


User provided reference genes

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