Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 1.4e-257 892.5 483 100.0
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 2.3e-114 416.8 478 57.7
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 2.4e-87 327.0 465 50.3
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 4.6e-62 243.0 460 42.4
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 4.6e-62 243.0 460 42.4
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 1.1e-55 221.9 521 38.0
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 5.1e-53 213.0 501 38.3
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 6.2e-51 206.1 507 36.1
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 1.4e-50 204.9 509 36.7
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 3.1e-50 203.8 589 34.0
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 3.1e-50 203.8 530 36.8
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 3.4e-49 200.3 536 35.4
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 4.4e-49 199.9 594 35.5
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 9.9e-49 198.7 584 34.1
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 9.9e-49 198.7 584 34.1
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 1.3e-48 198.4 578 34.4
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.7e-48 198.0 584 34.1
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.7e-48 198.0 599 33.7
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 1.7e-48 198.0 604 32.1
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.4e-48 196.1 573 34.9
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 1.1e-47 195.3 583 33.8
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.2e-47 193.7 569 35.0
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 3.2e-47 193.7 509 38.9
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 4.2e-47 193.4 566 33.7
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 9.3e-47 192.2 532 35.3
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 1.6e-46 191.4 603 33.3
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 2.1e-46 191.0 541 32.7
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 4.6e-46 189.9 550 34.0
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 6.0e-46 189.5 510 34.1
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 5.1e-45 186.4 583 32.4
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.5e-44 184.9 339 43.1
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 1.5e-44 184.9 525 35.2
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 2.5e-44 184.1 523 34.4
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 2.5e-44 184.1 583 32.4
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 2.5e-44 184.1 602 33.4
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 9.6e-44 182.2 575 33.4
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.6e-43 181.4 553 32.4
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.6e-43 180.3 539 33.0
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 6.2e-43 179.5 583 32.2
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 8.1e-43 179.1 507 35.5
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 8.1e-43 179.1 530 33.6
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 1.1e-42 178.7 562 33.3
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.4e-42 178.3 541 32.7
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 1.4e-42 178.3 571 32.6
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 6.9e-42 176.0 551 32.7
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 9.0e-42 175.6 583 32.8
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 9.0e-42 175.6 566 32.3
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.2e-41 175.3 601 32.8
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 2.0e-41 174.5 471 36.1
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 4.5e-41 173.3 572 33.6
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 5.8e-41 172.9 562 33.5
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 7.6e-41 172.6 601 32.1
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.7e-40 171.4 539 32.8
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 2.9e-40 170.6 589 33.4
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 3.8e-40 170.2 601 32.1
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 8.4e-40 169.1 532 35.0
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.4e-39 168.3 601 31.8
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.9e-39 167.9 323 43.3
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 5.4e-39 166.4 584 31.8
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 4.6e-38 163.3 718 28.3
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 6.0e-38 162.9 578 30.4
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 6.0e-38 162.9 548 32.7
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 6.0e-38 162.9 529 31.4
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 7.9e-38 162.5 470 34.3
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 1.0e-37 162.2 589 31.4
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 1.8e-37 161.4 585 31.8
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 3.9e-37 160.2 548 32.7
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 8.7e-37 159.1 577 31.2
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.1e-36 158.7 578 30.1
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.1e-36 158.7 551 30.3
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.9e-36 157.9 584 29.6
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 3.3e-36 157.1 601 31.3
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 7.4e-36 156.0 472 35.0
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 9.6e-36 155.6 468 34.6
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 9.6e-36 155.6 538 31.4
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 2.8e-35 154.1 619 29.6
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 6.2e-35 152.9 545 31.6
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 8.1e-35 152.5 529 33.3
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 1.4e-34 151.8 437 33.9
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 1.8e-34 151.4 537 30.7
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 2.4e-34 151.0 564 32.1
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 2.4e-34 151.0 579 29.5
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 6.9e-34 149.4 566 30.4
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 2.6e-33 147.5 565 31.2
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 4.5e-33 146.7 515 33.4
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 1.3e-32 145.2 555 30.1
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 3.8e-32 143.7 538 31.0
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 3.8e-32 143.7 542 30.3
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 3.8e-32 143.7 527 31.7
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 3.8e-32 143.7 515 31.3
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 6.5e-32 142.9 324 41.4
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 8.4e-32 142.5 582 29.7
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 2.5e-31 141.0 529 30.8
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 5.5e-31 139.8 555 29.7
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 7.1e-31 139.4 546 30.8
Lsat_1_v5_gn_9_88621 Lactuca sativa HOM05D003079 ORTHO05D003461 2.1e-30 137.9 501 32.9
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.7e-30 137.5 457 30.6
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 3.5e-30 137.1 533 31.7
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 4.6e-30 136.7 566 31.3
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 1.3e-29 135.2 528 29.5
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 5.1e-29 133.3 493 30.2
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 5.1e-29 133.3 501 32.5
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 6.7e-29 132.9 594 29.5
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.3e-27 128.6 448 29.9
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.4e-26 124.4 577 28.1
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 1.2e-25 122.1 426 33.3
HanXRQChr03g0079381 Helianthus annuus HOM05D003079 ORTHO05D003461 1.2e-25 122.1 270 36.3
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.7e-24 118.2 558 29.7
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 1.6e-22 111.7 526 30.0
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 2.1e-22 111.3 525 29.3
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 4.6e-22 110.2 534 29.8
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 7.9e-22 109.4 565 27.6
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.0e-21 109.0 346 35.0
Oeu062673.1 Olea europaea HOM05D003079 ORTHO05D003461 1.3e-21 108.6 295 36.3
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 2.5e-20 104.4 338 28.1
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 2.5e-20 104.4 485 30.7
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.6e-19 101.7 531 28.2
ECA240G3294 Erigeron canadensis HOM05D003079 ORTHO05D003461 4.8e-19 100.1 277 36.8
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 8.2e-19 99.4 545 27.5
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 1.4e-18 98.6 526 28.5
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.8e-18 98.2 491 28.7
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 1.5e-17 95.1 486 28.6
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.6e-17 94.4 536 28.2
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 3.4e-17 94.0 366 31.1
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.3e-16 92.0 509 29.5
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 3.2e-15 87.4 523 27.0
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 5.5e-15 86.7 523 27.3
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 9.4e-15 85.9 481 29.3
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 2.1e-14 84.7 503 28.6
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.0e-13 82.4 482 28.6
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.8e-13 81.6 536 26.3
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 1.8e-13 81.6 482 28.8
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 1.8e-13 81.6 468 27.8
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 5.1e-13 80.1 318 29.2
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 3.3e-12 77.4 455 27.0
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.3e-11 75.5 209 31.1
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 2.8e-11 74.3 446 26.7
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 4.1e-10 70.5 425 25.6
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.2e-09 68.9 260 25.8
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 5.9e-09 66.6 541 25.5
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.3e-08 65.5 468 29.1
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 1.7e-08 65.1 512 25.4
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 2.2e-08 64.7 410 26.1
Zm00001eb316300 Zea mays HOM05D003079 ORTHO05D003461 2.2e-08 64.7 514 24.7
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 3.8e-08 63.9 448 27.5
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.8e-08 63.9 464 27.4
Peaxi162Scf00006g00810 Petunia axillaris HOM05D003079 ORTHO05D003461 3.8e-08 63.9 250 28.4
MSTRG.14525 Avicennia marina HOM05D003079 ORTHO05D003461 5.0e-08 63.5 293 25.6
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 5.0e-08 63.5 517 25.0
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 1.4e-07 62.0 283 24.4
Ca_09552_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 1.4e-07 62.0 126 39.7
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 2.5e-07 61.2 282 24.1
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 2.5e-07 61.2 282 24.1
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 4.2e-07 60.5 470 26.8
SGA_v2.0_scaffold7G03549 Striga asiatica HOM05D003079 ORTHO05D003461 4.2e-07 60.5 364 27.7
Actinidia03677 Actinidia chinensis HOM05D003079 ORTHO05D003461 7.2e-07 59.7 112 38.4
Ca_06048_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 7.2e-07 59.7 110 40.9
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.2e-06 58.9 482 28.2
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 1.2e-06 58.9 283 23.3
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 1.6e-06 58.5 482 25.7
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 4.7e-06 57.0 471 25.5


User provided reference genes

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