Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.2e-260 901.7 447 100.0
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.2e-212 742.3 540 74.1
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.4e-190 669.1 442 80.5
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.1e-171 607.1 461 71.8
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.1e-170 601.3 600 57.8
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.6e-168 595.9 598 56.9
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 4.9e-167 591.7 441 72.6
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.1e-162 576.2 496 65.5
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.8e-161 573.2 645 53.6
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-160 570.1 461 68.5
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 4.4e-160 568.5 445 70.1
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.3e-159 567.0 576 57.8
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 8.3e-159 564.3 442 70.1
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 2.0e-157 559.7 419 72.3
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.0e-156 557.4 452 67.9
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.3e-156 556.2 444 70.5
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.3e-156 556.2 444 70.5
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 8.6e-156 554.3 444 70.3
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 8.6e-156 554.3 446 69.7
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 2.5e-155 552.7 445 69.7
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 9.5e-155 550.8 541 58.8
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.2e-154 550.4 555 58.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 6.2e-154 548.1 441 69.4
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 9.8e-152 540.8 449 65.3
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 4.1e-150 535.4 476 64.9
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 6.8e-137 491.5 439 62.4
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.8e-135 485.7 487 58.5
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.7e-127 460.3 361 69.5
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 2.3e-124 449.9 379 67.3
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.6e-120 436.4 468 55.6
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.2e-119 433.3 439 57.4
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.8e-116 423.7 461 54.9
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 2.8e-114 416.4 627 44.0
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 6.0e-109 398.7 239 82.0
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 2.3e-108 396.7 231 84.8
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 7.9e-101 371.7 217 83.4
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-99 364.8 210 84.3
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-99 364.8 210 84.3
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-99 364.8 210 84.3
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 2.4e-97 360.1 473 48.0
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 2.4e-97 360.1 210 83.8
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 2.4e-97 360.1 210 83.8
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 2.4e-97 360.1 210 83.8
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 4.5e-96 355.9 209 82.3
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 5.9e-96 355.5 246 74.0
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 5.9e-96 355.5 246 74.0
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.4e-92 344.4 189 87.3
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 7.7e-88 328.6 384 53.1
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.6e-85 320.9 188 83.0
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.6e-85 320.9 188 83.0
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 6.1e-85 318.9 189 81.5
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.4e-83 312.8 209 76.1
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.5e-80 304.3 184 79.9
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-79 301.2 175 83.4
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 7.2e-78 295.4 226 72.1
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.0e-76 291.6 168 82.7
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 2.3e-76 290.4 168 82.1
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 3.1e-73 280.0 189 74.1
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 1.7e-71 274.2 162 81.5
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.9e-71 273.5 169 79.9
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 1.1e-70 271.6 219 71.7
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-70 271.2 170 77.6
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 4.7e-69 266.2 237 67.5
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 6.1e-69 265.8 219 70.3
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 5.2e-68 262.7 219 69.9
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 8.8e-68 261.9 243 62.6
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 3.4e-67 260.0 167 76.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 5.7e-67 259.2 222 68.5
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 5.7e-67 259.2 222 68.5
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 5.7e-67 259.2 222 68.5
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 3.7e-66 256.5 224 67.0
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 5.3e-65 252.7 222 67.1
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 1.6e-64 251.1 209 63.2
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-63 248.1 239 63.6
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-63 248.1 239 63.6
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 6.1e-61 239.2 206 67.5
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.3e-60 237.3 207 68.1
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.3e-60 237.3 223 64.1
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 3.4e-59 233.4 209 67.9
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 4.4e-59 233.0 124 85.5
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 3.7e-58 229.9 199 68.8
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 4.8e-58 229.6 204 66.7
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.1e-57 228.4 190 68.9
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-57 228.4 245 58.4
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-57 228.0 549 36.2
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 3.1e-57 226.9 206 67.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 4.1e-57 226.5 208 65.9
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 7.0e-57 225.7 177 74.0
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 2.0e-56 224.2 219 63.5
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 2.0e-56 224.2 219 63.5
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 2.0e-56 224.2 219 63.5
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 2.0e-56 224.2 219 63.5
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 2.0e-56 224.2 219 63.5
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 2.0e-56 224.2 219 63.5
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 1.0e-55 221.9 168 69.0
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.9e-55 220.3 211 64.0
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.1e-54 218.4 201 67.2
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.5e-54 218.0 130 82.3
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 8.0e-53 212.2 194 67.0
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 3.0e-52 210.3 202 60.4
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 3.0e-52 210.3 202 60.4
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 5.4e-49 199.5 111 85.6
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.2e-49 198.7 154 65.6
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.9e-46 191.0 109 78.0
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 5.6e-46 189.5 159 70.4
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 7.3e-46 189.1 201 60.2
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 7.3e-46 189.1 201 60.2
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.2e-45 188.3 154 71.4
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.6e-45 188.0 113 77.9
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 1.8e-44 184.5 163 67.5
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 3.4e-43 180.3 208 57.7
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.0e-39 167.2 106 80.2
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 5.6e-38 162.9 107 77.6
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.7e-34 151.4 150 61.3
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.9e-34 150.6 162 61.1
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 2.9e-34 150.6 100 76.0
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-32 144.4 192 53.6
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 7.8e-32 142.5 154 61.0
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 5.6e-30 136.3 131 57.3
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 9.5e-30 135.6 96 72.9
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 4.7e-29 133.3 93 75.3
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 4.7e-29 133.3 91 76.9
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 4.7e-29 133.3 91 76.9
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 6.2e-29 132.9 90 77.8
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 8.1e-29 132.5 93 74.2
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 5.4e-25 119.8 70 82.9
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.9e-23 113.6 139 56.1
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 2.5e-22 110.9 71 80.3
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-21 108.6 175 43.4
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-21 108.2 91 59.3
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 4.0e-20 103.6 150 47.3
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.8e-20 102.8 155 45.2
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.5e-19 101.7 109 52.3
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.7e-18 98.2 59 84.7
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-18 98.2 117 50.4
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 7.1e-17 92.8 66 68.2
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 6.6e-15 86.3 77 67.5
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.3e-14 84.0 54 72.2
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 5.6e-14 83.2 64 67.2
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.3e-13 82.0 82 62.2
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 1.3e-13 82.0 45 86.7
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 3.6e-13 80.5 42 90.5
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.1e-12 79.0 79 63.3
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-12 78.6 51 68.6
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-11 75.1 81 61.7
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 7.6e-11 72.8 48 79.2
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 2.9e-10 70.9 68 54.4
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 4.9e-10 70.1 46 76.1
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 8.4e-10 69.3 162 32.1
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 3.2e-09 67.4 55 56.4
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 5.4e-09 66.6 79 53.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 5.4e-09 66.6 91 42.9
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 5.4e-09 66.6 67 55.2
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 3.9e-07 60.5 47 61.7
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 6.6e-07 59.7 48 64.6
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.7e-07 59.3 39 71.8
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 1.1e-06 58.9 51 58.8
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 1.9e-06 58.2 63 65.1
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 3.3e-06 57.4 149 35.6


User provided reference genes

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