Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 6.7e-131 470.7 239 100.0
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 9.1e-88 327.4 231 77.1
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 9.1e-88 327.4 231 77.1
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.0e-84 314.3 230 73.9
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 8.9e-83 310.8 231 74.5
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.3e-78 296.2 226 72.1
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.9e-77 293.1 255 63.1
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 3.3e-77 292.4 231 69.3
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 9.5e-77 290.8 231 69.3
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 8.0e-76 287.7 231 68.4
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 2.3e-75 286.2 231 68.0
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 3.7e-73 278.9 252 63.1
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.7e-73 278.9 231 68.8
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 3.7e-73 278.9 231 68.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 6.4e-73 278.1 231 66.7
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-72 277.3 252 63.5
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-72 277.3 252 63.5
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 9.2e-72 274.2 231 65.4
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.2e-71 273.9 235 65.5
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.2e-71 273.9 235 65.5
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.6e-71 271.9 233 65.7
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 6.0e-71 271.6 218 69.3
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 6.0e-71 271.6 217 67.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 3.9e-70 268.9 235 66.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 3.9e-70 268.9 235 66.0
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 3.9e-70 268.9 235 66.0
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 3.9e-70 268.9 235 66.0
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.0e-70 268.5 231 64.1
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 2.5e-69 266.2 235 63.8
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 5.6e-69 265.0 218 67.4
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.6e-68 263.5 231 65.4
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.1e-68 263.1 236 63.6
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.1e-68 263.1 236 63.6
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.6e-68 262.3 231 63.2
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 8.0e-68 261.2 232 62.9
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.1e-67 260.8 236 63.1
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.1e-67 260.8 236 63.1
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.1e-67 260.8 236 63.1
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.5e-66 256.9 231 63.6
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 3.4e-66 255.8 202 68.3
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 8.3e-65 251.1 222 64.0
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.0e-62 244.2 218 63.8
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-62 244.2 211 66.4
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 1.7e-62 243.4 220 63.2
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.7e-62 243.4 231 61.5
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 1.7e-62 243.4 234 61.5
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 1.7e-62 243.4 234 61.5
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 1.7e-62 243.4 234 61.5
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 1.7e-62 243.4 234 61.5
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 1.7e-62 243.4 234 61.5
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 1.7e-62 243.4 234 61.5
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.5e-61 239.6 218 61.5
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-61 239.2 253 56.9
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 4.3e-61 238.8 223 61.9
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 5.6e-61 238.4 218 61.5
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 5.6e-61 238.4 214 63.6
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.1e-59 234.2 218 60.6
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-57 226.9 221 60.6
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 3.5e-55 219.2 214 59.8
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.5e-55 219.2 214 59.8
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.9e-53 213.4 250 53.6
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.7e-52 208.8 157 72.6
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.1e-51 207.6 130 81.5
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.7e-49 200.3 206 57.8
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 2.7e-47 193.0 177 62.7
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-46 190.3 205 58.0
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 1.2e-44 184.1 246 49.2
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.6e-42 176.4 162 61.1
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.9e-40 170.2 106 82.1
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.9e-40 170.2 106 82.1
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 4.6e-39 165.6 162 60.5
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 6.0e-39 165.2 176 56.8
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.0e-39 165.2 214 51.9
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 7.8e-39 164.9 218 48.2
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 1.9e-37 160.2 106 78.3
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 2.5e-37 159.8 167 56.3
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.5e-37 159.8 153 62.1
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.8e-34 148.7 229 44.5
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.3e-33 147.5 156 57.7
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 6.4e-33 145.2 158 55.7
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 6.4e-33 145.2 158 55.7
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 8.4e-33 144.8 157 56.1
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 4.2e-32 142.5 168 52.4
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.0e-30 137.9 96 74.0
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 7.4e-29 131.7 93 73.1
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.8e-27 127.1 93 72.0
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 3.1e-27 126.3 93 68.8
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.3e-27 125.6 204 43.6
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 2.0e-26 123.6 147 53.1
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 7.1e-24 115.2 78 75.6
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.6e-23 114.0 166 45.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.5e-23 112.8 75 76.0
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 5.1e-22 109.0 171 43.3
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-21 107.8 87 66.7
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.6e-21 105.5 59 84.7
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 7.4e-21 105.1 65 81.5
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-20 103.6 59 83.1
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.7e-20 102.8 59 81.4
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 4.0e-19 99.4 59 79.7
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 7.6e-18 95.1 59 83.1
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 5.5e-16 89.0 66 66.7
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-15 87.4 143 44.1
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 1.0e-14 84.7 55 74.5
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 8.7e-14 81.6 43 93.0
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-11 73.9 67 59.7
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 9.0e-11 71.6 48 79.2
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 1.7e-09 67.4 79 54.4
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 2.9e-09 66.6 46 71.7
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 5.0e-09 65.9 61 57.4
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-08 63.5 61 57.4
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.4e-06 57.8 34 82.4


User provided reference genes

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