Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0335311 Helianthus annuus HOM05D000898 ORTHO05D019246 1.8e-47 192.2 95 100.0
HanXRQChr11g0329841 Helianthus annuus HOM05D000898 ORTHO05D019246 8.8e-34 146.7 95 82.1
HanXRQChr15g0484661 Helianthus annuus HOM05D000898 ORTHO05D019246 8.8e-34 146.7 95 82.1
HanXRQChr02g0049631 Helianthus annuus HOM05D000898 ORTHO05D019246 4.4e-33 144.4 95 81.1
HanXRQChr08g0221391 Helianthus annuus HOM05D000898 ORTHO05D019246 7.4e-33 143.7 95 80.0
HanXRQChr11g0347641 Helianthus annuus HOM05D000898 ORTHO05D019246 1.7e-32 142.5 95 80.0
HanXRQChr14g0428841 Helianthus annuus HOM05D000898 ORTHO05D019246 1.7e-32 142.5 95 81.1
HanXRQChr08g0224071 Helianthus annuus HOM05D000898 ORTHO05D000762 1.6e-14 82.8 75 66.7
ECA233G4102 Erigeron canadensis HOM05D000898 ORTHO05D000762 2.9e-13 78.6 75 64.0
FAN06G3382 Fragaria x ananassa HOM05D000898 ORTHO05D000762 3.8e-13 78.2 82 59.8
Lsat_1_v5_gn_8_8241 Lactuca sativa HOM05D000898 ORTHO05D000762 3.8e-13 78.2 75 62.7
Haze_13831 Corylus avellana HOM05D000898 ORTHO05D000762 1.9e-12 75.9 75 61.3
DCAR_020206 Daucus carota HOM05D000898 ORTHO05D000762 1.9e-12 75.9 71 63.4
Cpa.g.sc3.279 Carica papaya HOM05D000898 ORTHO05D000762 2.5e-12 75.5 75 61.3
CiPaw.03G096600 Carya illinoinensis HOM05D000898 ORTHO05D000762 2.5e-12 75.5 75 61.3
DCAR_009431 Daucus carota HOM05D000898 ORTHO05D000762 2.5e-12 75.5 71 62.0
THA.LOC104825069 Tarenaya hassleriana HOM05D000898 ORTHO05D000762 2.5e-12 75.5 75 61.3
AT5G51570 Arabidopsis thaliana HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
BcaB01g04165 Brassica carinata HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
BcaC01g06130 Brassica carinata HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
A03p16090 Brassica napus HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
C03p18940 Brassica napus HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
BolC3t14285H Brassica oleracea HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
BraA03t10900Z Brassica rapa HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
CARHR264370 Cardamine hirsuta HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
FAN06G2283 Fragaria x ananassa HOM05D000898 ORTHO05D000762 4.2e-12 74.7 82 58.5
MD01G1185100 Malus domestica HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
Sp6g13810 Schrenkiella parvula HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 61.3
THA.LOC104811512 Tarenaya hassleriana HOM05D000898 ORTHO05D000762 4.2e-12 74.7 75 60.0
Ca_25236_v3 Cicer arietinum L. HOM05D000898 ORTHO05D000762 5.5e-12 74.3 79 57.0
Ciclev10005343m.g Citrus clementina HOM05D000898 ORTHO05D000762 5.5e-12 74.3 75 60.0
Glyma.09G154400 Glycine max HOM05D000898 ORTHO05D000762 5.5e-12 74.3 71 62.0
Glyma.16G204900 Glycine max HOM05D000898 ORTHO05D000762 5.5e-12 74.3 71 62.0
Phvul.004G127900 Phaseolus vulgaris HOM05D000898 ORTHO05D000762 5.5e-12 74.3 71 62.0
Aqoxy7G00635 Aquilegia oxysepala HOM05D000898 ORTHO05D000762 7.2e-12 73.9 75 60.0
AL64U10010 Arabidopsis lyrata HOM05D000898 ORTHO05D000762 7.2e-12 73.9 75 60.0
Carub.0008s1161 Capsella rubella HOM05D000898 ORTHO05D000762 7.2e-12 73.9 75 60.0
Thhalv10014263m.g Eutrema salsugineum HOM05D000898 ORTHO05D000762 7.2e-12 73.9 75 60.0
FAN10G2407 Fragaria x ananassa HOM05D000898 ORTHO05D000762 7.2e-12 73.9 82 58.5
Prupe.2G281600 Prunus persica HOM05D000898 ORTHO05D000762 7.2e-12 73.9 75 61.3
Sed0001159 Sechium edule HOM05D000898 ORTHO05D000762 7.2e-12 73.9 75 58.7
VMungo0464G1022 Vigna mungo HOM05D000898 ORTHO05D000762 7.2e-12 73.9 71 62.0
BcaB05g22675 Brassica carinata HOM05D000898 ORTHO05D000762 9.5e-12 73.6 72 62.5
MD07G1257400 Malus domestica HOM05D000898 ORTHO05D000762 9.5e-12 73.6 75 60.0
Peaxi162Scf01372g00045 Petunia axillaris HOM05D000898 ORTHO05D000762 9.5e-12 73.6 71 62.0
COL.COLO4_14172 Corchorus olitorius HOM05D000898 ORTHO05D000762 1.2e-11 73.2 75 60.0
Lj2g0002960 Lotus japonicus HOM05D000898 ORTHO05D000762 1.2e-11 73.2 79 57.0
PSO478G3071 Papaver somniferum HOM05D000898 ORTHO05D000762 1.2e-11 73.2 75 58.7
PSO782G5530 Papaver somniferum HOM05D000898 ORTHO05D000762 1.2e-11 73.2 75 58.7
RcHm_v2.0_Chr1g0375061 Rosa chinensis HOM05D000898 ORTHO05D000762 1.2e-11 73.2 75 58.7
FvH4_7g28140 Fragaria vesca HOM05D000898 ORTHO05D000762 1.6e-11 72.8 75 58.7
FAN01G2410 Fragaria x ananassa HOM05D000898 ORTHO05D000762 1.6e-11 72.8 75 58.7
FAN03G1099 Fragaria x ananassa HOM05D000898 ORTHO05D000762 1.6e-11 72.8 75 58.7
FAN03G2700 Fragaria x ananassa HOM05D000898 ORTHO05D000762 1.6e-11 72.8 75 58.7
SGA_v2.0_scaffold486G52384 Striga asiatica HOM05D000898 ORTHO05D000762 1.6e-11 72.8 71 59.2
CSS0037794 Camellia sinensis var. sinensis HOM05D000898 ORTHO05D000762 2.1e-11 72.4 75 58.7
Eucgr.K00148 Eucalyptus grandis HOM05D000898 ORTHO05D000762 2.1e-11 72.4 75 60.0
Lalb_Chr02g0149911 Lupinus albus HOM05D000898 ORTHO05D000762 2.1e-11 72.4 71 60.6
Manes.06G137400 Manihot esculenta HOM05D000898 ORTHO05D000762 2.1e-11 72.4 75 60.0
Medtr6g460470 Medicago truncatula HOM05D000898 ORTHO05D000762 2.1e-11 72.4 79 57.0
Psat1g111120 Pisum sativum HOM05D000898 ORTHO05D000762 2.1e-11 72.4 79 57.0
Psat1g111160 Pisum sativum HOM05D000898 ORTHO05D000762 2.1e-11 72.4 71 60.6
Hund04634 Selenicereus undatus HOM05D000898 ORTHO05D000762 2.1e-11 72.4 75 58.7
TWI14G0503 Tripterygium wilfordii HOM05D000898 ORTHO05D000762 2.1e-11 72.4 75 60.0
TWI23G0285 Tripterygium wilfordii HOM05D000898 ORTHO05D000762 2.1e-11 72.4 75 60.0
Gorai.006G064900 Gossypium raimondii HOM05D000898 ORTHO05D000762 2.8e-11 72.0 75 58.7
Lalb_Chr01g0008791 Lupinus albus HOM05D000898 ORTHO05D000762 2.8e-11 72.0 71 62.0
QL09p018743 Quercus lobata HOM05D000898 ORTHO05D000762 2.8e-11 72.0 75 58.7
Ah.13g067230 Amaranthus hybridus HOM05D000898 ORTHO05D000762 3.6e-11 71.6 75 58.7
AUR62016107 Chenopodium quinoa HOM05D000898 ORTHO05D000762 3.6e-11 71.6 75 58.7
AUR62035053 Chenopodium quinoa HOM05D000898 ORTHO05D000762 3.6e-11 71.6 75 58.7
ClCG01G005140 Citrullus lanatus HOM05D000898 ORTHO05D000762 3.6e-11 71.6 75 57.3
MELO3C005414.2 Cucumis melo HOM05D000898 ORTHO05D000762 3.6e-11 71.6 75 57.3
CsaV3_5G005420 Cucumis sativus L. HOM05D000898 ORTHO05D000762 3.6e-11 71.6 75 57.3
Gohir.A09G044200 Gossypium hirsutum HOM05D000898 ORTHO05D000762 3.6e-11 71.6 75 58.7
Gohir.D09G045500 Gossypium hirsutum HOM05D000898 ORTHO05D000762 3.6e-11 71.6 75 58.7
Oeu039211.1 Olea europaea HOM05D000898 ORTHO05D000762 3.6e-11 71.6 71 60.6
GSVIVG01018528001 Vitis vinifera HOM05D000898 ORTHO05D000762 4.7e-11 71.2 75 58.7
MSTRG.27176 Avicennia marina HOM05D000898 ORTHO05D000762 6.1e-11 70.9 71 59.2
CDE11G1142 Ceratophyllum demersum HOM05D000898 ORTHO05D000762 6.1e-11 70.9 75 56.0
Duzib068G0965 Durio zibethinus HOM05D000898 ORTHO05D000762 6.1e-11 70.9 75 58.7
Hma1.2p1_0099F.1_g048980 Hydrangea macrophylla HOM05D000898 ORTHO05D000762 6.1e-11 70.9 75 58.7
Nn4g26385 Nelumbo nucifera HOM05D000898 ORTHO05D000762 6.1e-11 70.9 75 57.3
Potri.012G129000 Populus trichocarpa HOM05D000898 ORTHO05D000762 6.1e-11 70.9 75 58.7
Zm00001eb269970 Zea mays HOM05D000898 ORTHO05D000762 6.1e-11 70.9 75 56.0
arahy.Tifrunner.gnm1.ann1.EYY49K Arachis hypogaea HOM05D000898 ORTHO05D000762 8.0e-11 70.5 71 59.2
arahy.Tifrunner.gnm1.ann1.GN0B30 Arachis hypogaea HOM05D000898 ORTHO05D000762 8.0e-11 70.5 71 59.2
Duzib205G0064 Durio zibethinus HOM05D000898 ORTHO05D000762 8.0e-11 70.5 75 58.7
Aa31LG3G8010 Aethionema arabicum HOM05D000898 ORTHO05D000762 1.0e-10 70.1 75 56.0
CAN.G277.9 Capsicum annuum HOM05D000898 ORTHO05D000762 1.0e-10 70.1 71 60.6
CDE04G3149 Ceratophyllum demersum HOM05D000898 ORTHO05D000762 1.0e-10 70.1 75 56.0
CDE12G0703 Ceratophyllum demersum HOM05D000898 ORTHO05D000762 1.0e-10 70.1 75 56.0
Nitab4.5_0000072g0460 Nicotiana tabacum HOM05D000898 ORTHO05D000762 1.0e-10 70.1 71 60.6
Solyc03g007190.3 Solanum lycopersicum HOM05D000898 ORTHO05D000762 1.0e-10 70.1 71 60.6
Sopen03g003170 Solanum pennellii HOM05D000898 ORTHO05D000762 1.0e-10 70.1 71 60.6
PGSC0003DMG400031006 Solanum tuberosum HOM05D000898 ORTHO05D000762 1.0e-10 70.1 71 60.6
unitig_46.g18772 Utricularia gibba HOM05D000898 ORTHO05D000762 1.0e-10 70.1 75 56.0
Gohir.D12G264400 Gossypium hirsutum HOM05D000898 ORTHO05D000762 1.4e-10 69.7 75 57.3
Gorai.008G283900 Gossypium raimondii HOM05D000898 ORTHO05D000762 1.4e-10 69.7 75 57.3
MBI12_g34014_MAGBIO Magnolia biondii HOM05D000898 ORTHO05D000762 1.4e-10 69.7 75 58.7
Nn1g01247 Nelumbo nucifera HOM05D000898 ORTHO05D000762 1.4e-10 69.7 75 57.3
Os06g0136000 Oryza sativa ssp. japonica HOM05D000898 ORTHO05D000762 1.4e-10 69.7 75 56.0
Rhsim09G0193300 Rhododendron simsii HOM05D000898 ORTHO05D000762 1.4e-10 69.7 75 57.3
Thecc.03G160800 Theobroma cacao HOM05D000898 ORTHO05D000762 1.4e-10 69.7 75 57.3
Atru.chr1.641 Acer truncatum HOM05D000898 ORTHO05D000762 1.8e-10 69.3 75 58.7
ClCG05G007470 Citrullus lanatus HOM05D000898 ORTHO05D000762 1.8e-10 69.3 75 57.3
MELO3C006831.2 Cucumis melo HOM05D000898 ORTHO05D000762 1.8e-10 69.3 75 57.3
Migut.F00436 Erythranthe guttata HOM05D000898 ORTHO05D000762 1.8e-10 69.3 71 59.2
Sed0007034 Sechium edule HOM05D000898 ORTHO05D000762 1.8e-10 69.3 75 57.3
TAR374G1386 Trochodendron aralioides HOM05D000898 ORTHO05D000762 1.8e-10 69.3 75 56.0
CDE09G1272 Ceratophyllum demersum HOM05D000898 ORTHO05D000762 2.3e-10 68.9 75 54.7
Nitab4.5_0015412g0010 Nicotiana tabacum HOM05D000898 ORTHO05D000762 2.3e-10 68.9 71 59.2
Peaxi162Scf00234g00713 Petunia axillaris HOM05D000898 ORTHO05D000762 2.3e-10 68.9 71 59.2
SalBow4G0566 Salvia bowleyana HOM05D000898 ORTHO05D000762 2.3e-10 68.9 71 57.7
SalBow4G2305 Salvia bowleyana HOM05D000898 ORTHO05D000762 2.3e-10 68.9 71 57.7
PGSC0003DMG400027412 Solanum tuberosum HOM05D000898 ORTHO05D000762 2.3e-10 68.9 71 59.2
ATR0810G044 Amborella trichopoda HOM05D000898 ORTHO05D000762 3.0e-10 68.6 75 57.3
CAN.G1187.7 Capsicum annuum HOM05D000898 ORTHO05D000762 3.0e-10 68.6 75 54.7
CsaV3_3G016320 Cucumis sativus L. HOM05D000898 ORTHO05D000762 3.0e-10 68.6 75 56.0
Gohir.A12G264200 Gossypium hirsutum HOM05D000898 ORTHO05D000762 3.0e-10 68.6 75 56.0
PGR142G0878 Punica granatum HOM05D000898 ORTHO05D000762 3.0e-10 68.6 75 54.7
Sabra15G0143900 Salix brachista HOM05D000898 ORTHO05D000762 3.0e-10 68.6 75 57.3
Actinidia25033 Actinidia chinensis HOM05D000898 ORTHO05D000762 4.0e-10 68.2 75 56.0
CANSAT56G3165 Cannabis sativa HOM05D000898 ORTHO05D000762 4.0e-10 68.2 70 57.1
Sabra12G0096800 Salix brachista HOM05D000898 ORTHO05D000762 4.0e-10 68.2 75 56.0
vmacro06771 Vaccinium macrocarpon HOM05D000898 ORTHO05D000762 4.0e-10 68.2 75 56.0
Sc09g0006760 Simmondsia chinensis HOM05D000898 ORTHO05D000762 5.2e-10 67.8 75 56.0
HPP92_014670 Vanilla planifolia HOM05D000898 ORTHO05D000762 6.8e-10 67.4 75 56.0
Cc02_g03940 Coffea canephora HOM05D000898 ORTHO05D000762 8.8e-10 67.0 71 57.7
TAR375G0139 Trochodendron aralioides HOM05D000898 ORTHO05D000762 8.8e-10 67.0 75 56.0
TAR375G0198 Trochodendron aralioides HOM05D000898 ORTHO05D000762 8.8e-10 67.0 75 56.0
MSTRG.8805 Avicennia marina HOM05D000898 ORTHO05D000762 1.5e-09 66.2 71 57.7
Dinv22977 Davidia involucrata HOM05D000898 ORTHO05D000762 2.6e-09 65.5 75 56.0
Potri.015G130600 Populus trichocarpa HOM05D000898 ORTHO05D000762 2.6e-09 65.5 75 56.0
SEGI_40208 Sequoiadendron giganteum HOM05D000898 ORTHO05D000762 1.3e-08 63.2 71 54.9
Lsat_1_v5_gn_3_77940 Lactuca sativa HOM05D000898 ORTHO05D019246 3.7e-08 61.6 64 54.7
AagrBONN_evm.TU.Sc2ySwM_344.2841 Anthoceros agrestis HOM05D000898 ORTHO05D000762 1.8e-07 59.3 71 50.7
SMO365G0055 Selaginella moellendorffii HOM05D000898 ORTHO05D000762 1.8e-07 59.3 71 49.3
Mapoly0118s0010 Marchantia polymorpha HOM05D000898 ORTHO05D000762 9.2e-07 57.0 71 50.7
Pp3c5_9960 Physcomitrium patens HOM05D000898 ORTHO05D000762 1.2e-06 56.6 71 49.3
EL10Ac3g05797 Beta vulgaris HOM05D000898 ORTHO05D000762 4.5e-06 54.7 61 55.7
BcaC09g51585 Brassica carinata HOM05D000898 ORTHO05D024477 4.5e-06 54.7 73 47.9
AUR62038870 Chenopodium quinoa HOM05D000898 ORTHO05D000762 5.9e-06 54.3 78 42.3
SMO364G0526 Selaginella moellendorffii HOM05D000898 ORTHO05D000762 5.9e-06 54.3 71 47.9


User provided reference genes

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