Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.7e-36 154.8 79 100.0
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.3e-30 136.0 112 68.8
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.3e-17 92.8 65 73.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 6.2e-17 90.5 52 86.5
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.1e-16 89.7 52 88.5
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.8e-16 89.0 65 70.8
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.8e-16 89.0 65 69.2
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.8e-16 89.0 48 91.7
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-16 88.6 81 61.7
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 3.1e-16 88.2 52 86.5
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 3.1e-16 88.2 52 84.6
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.1e-16 88.2 52 84.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 4.0e-16 87.8 65 69.2
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 5.3e-16 87.4 52 84.6
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 5.3e-16 87.4 48 91.7
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 5.3e-16 87.4 48 91.7
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 5.3e-16 87.4 65 70.8
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 5.3e-16 87.4 52 84.6
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 5.3e-16 87.4 52 84.6
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 5.3e-16 87.4 52 84.6
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 6.9e-16 87.0 52 84.6
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 9.0e-16 86.7 61 72.1
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 86.5
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 82.7
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 82.7
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 9.0e-16 86.7 65 69.2
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 82.7
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 86.5
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 9.0e-16 86.7 52 84.6
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.2e-15 86.3 52 82.7
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.2e-15 86.3 52 82.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.2e-15 86.3 52 84.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.2e-15 86.3 50 84.0
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.2e-15 86.3 52 82.7
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.2e-15 86.3 52 82.7
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.2e-15 86.3 52 82.7
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.2e-15 86.3 52 82.7
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.2e-15 86.3 65 69.2
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 1.2e-15 86.3 52 82.7
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.5e-15 85.9 52 82.7
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.5e-15 85.9 52 82.7
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 1.5e-15 85.9 54 77.8
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.5e-15 85.9 65 69.2
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.5e-15 85.9 65 66.2
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.5e-15 85.9 52 84.6
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 2.0e-15 85.5 65 69.2
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 2.0e-15 85.5 52 80.8
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.0e-15 85.5 52 82.7
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.0e-15 85.5 52 80.8
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.0e-15 85.5 65 69.2
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.0e-15 85.5 65 69.2
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.0e-15 85.5 52 82.7
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.0e-15 85.5 61 72.1
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.0e-15 85.5 65 67.7
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.0e-15 85.5 65 67.7
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 2.0e-15 85.5 65 69.2
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 2.0e-15 85.5 65 69.2
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.0e-15 85.5 52 80.8
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 2.0e-15 85.5 52 82.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.0e-15 85.5 52 84.6
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 2.0e-15 85.5 52 82.7
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.6e-15 85.1 52 82.7
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.6e-15 85.1 52 82.7
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.6e-15 85.1 65 69.2
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.6e-15 85.1 52 82.7
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 3.4e-15 84.7 65 67.7
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.4e-15 84.7 52 82.7
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.4e-15 84.7 52 82.7
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.5e-15 84.3 52 80.8
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 4.5e-15 84.3 52 80.8
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 4.5e-15 84.3 52 80.8
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 4.5e-15 84.3 52 80.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 4.5e-15 84.3 65 69.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 4.5e-15 84.3 52 84.6
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 4.5e-15 84.3 52 84.6
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 5.8e-15 84.0 52 82.7
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 5.8e-15 84.0 52 82.7
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 5.8e-15 84.0 47 89.4
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 5.8e-15 84.0 52 82.7
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 5.8e-15 84.0 47 89.4
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.8e-15 84.0 47 89.4
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.8e-15 84.0 47 89.4
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 5.8e-15 84.0 52 82.7
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 7.6e-15 83.6 65 67.7
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 9.9e-15 83.2 52 80.8
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 9.9e-15 83.2 60 73.3
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 9.9e-15 83.2 60 71.7
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.9e-15 83.2 52 80.8
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.9e-15 83.2 52 80.8
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 9.9e-15 83.2 52 80.8
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 9.9e-15 83.2 47 89.4
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 9.9e-15 83.2 65 67.7
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.3e-14 82.8 64 67.2
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.7e-14 82.4 65 64.6
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.2e-14 82.0 65 63.1
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.2e-14 82.0 65 66.2
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.9e-14 80.9 65 63.1
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.9e-14 80.9 65 63.1
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 8.4e-14 80.1 66 60.6
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.4e-13 79.3 66 60.6
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.4e-13 78.6 60 65.0
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 2.4e-13 78.6 52 75.0
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 2.4e-13 78.6 66 59.1
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 3.2e-13 78.2 61 68.9
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.2e-12 76.3 66 56.1
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.2e-12 76.3 52 75.0
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.5e-12 74.7 50 76.0
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 6.0e-12 73.9 47 72.3
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.8e-11 72.4 58 63.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.5e-10 68.6 47 63.8
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 9.6e-10 66.6 60 51.7
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 3.1e-08 61.6 48 54.2
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 5.8e-07 57.4 64 50.0
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.8e-06 54.7 53 45.3


User provided reference genes

Program Settings