Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334991 Helianthus annuus HOM05D000113 ORTHO05D219834 3.1e-70 268.5 147 100.0
HanXRQChr04g0117181 Helianthus annuus HOM05D000113 ORTHO05D001798 3.6e-10 68.9 38 81.6
Dinv40643 Davidia involucrata HOM05D000113 ORTHO05D001798 4.7e-10 68.6 41 73.2
Lsat_1_v5_gn_7_23681 Lactuca sativa HOM05D000113 ORTHO05D001798 1.4e-09 67.0 38 76.3
EL10Ac8g20481 Beta vulgaris HOM05D000113 ORTHO05D001798 1.8e-09 66.6 38 78.9
AUR62031132 Chenopodium quinoa HOM05D000113 ORTHO05D001798 1.8e-09 66.6 38 78.9
AUR62036538 Chenopodium quinoa HOM05D000113 ORTHO05D001798 1.8e-09 66.6 38 78.9
CAN.G742.42 Capsicum annuum HOM05D000113 ORTHO05D001798 2.3e-09 66.2 38 73.7
Sc05g0007250 Simmondsia chinensis HOM05D000113 ORTHO05D001798 2.3e-09 66.2 38 76.3
Solyc09g097820.3 Solanum lycopersicum HOM05D000113 ORTHO05D001798 2.3e-09 66.2 38 73.7
Sopen09g035760 Solanum pennellii HOM05D000113 ORTHO05D001798 2.3e-09 66.2 38 73.7
PGSC0003DMG402017925 Solanum tuberosum HOM05D000113 ORTHO05D001798 2.3e-09 66.2 38 73.7
COL.COLO4_31356 Corchorus olitorius HOM05D000113 ORTHO05D001798 3.1e-09 65.9 41 68.3
Gohir.A10G029900 Gossypium hirsutum HOM05D000113 ORTHO05D001798 3.1e-09 65.9 41 68.3
Gohir.D10G030500 Gossypium hirsutum HOM05D000113 ORTHO05D001798 3.1e-09 65.9 41 68.3
Gorai.011G032400 Gossypium raimondii HOM05D000113 ORTHO05D001798 3.1e-09 65.9 41 68.3
Peaxi162Scf00286g00825 Petunia axillaris HOM05D000113 ORTHO05D001798 5.2e-09 65.1 38 71.1
Actinidia39496 Actinidia chinensis HOM05D000113 ORTHO05D001798 6.8e-09 64.7 41 65.9
Nitab4.5_0000309g0350 Nicotiana tabacum HOM05D000113 ORTHO05D001798 8.9e-09 64.3 39 69.2
TAR624G1113 Trochodendron aralioides HOM05D000113 ORTHO05D001798 8.9e-09 64.3 41 65.9
Ciclev10014624m.g Citrus clementina HOM05D000113 ORTHO05D001798 1.2e-08 63.9 41 68.3
Cc02_g14380 Coffea canephora HOM05D000113 ORTHO05D001798 1.2e-08 63.9 38 73.7
MELO3C002633.2 Cucumis melo HOM05D000113 ORTHO05D001798 1.5e-08 63.5 38 73.7
CsaV3_1G012660 Cucumis sativus L. HOM05D000113 ORTHO05D001798 1.5e-08 63.5 38 73.7
Nn1g08998 Nelumbo nucifera HOM05D000113 ORTHO05D001798 1.5e-08 63.5 41 68.3
Sed0004866 Sechium edule HOM05D000113 ORTHO05D001798 1.5e-08 63.5 38 73.7
Ah.09g237860 Amaranthus hybridus HOM05D000113 ORTHO05D001798 2.0e-08 63.2 38 73.7
Cpa.g.sc7.26 Carica papaya HOM05D000113 ORTHO05D001798 2.0e-08 63.2 38 73.7
Thecc.06G176600 Theobroma cacao HOM05D000113 ORTHO05D001798 2.0e-08 63.2 41 63.4
CANSAT35G0927 Cannabis sativa HOM05D000113 ORTHO05D001798 2.6e-08 62.8 40 67.5
Oeu026694.1 Olea europaea HOM05D000113 ORTHO05D001798 2.6e-08 62.8 37 73.0
Aqoxy4G00513 Aquilegia oxysepala HOM05D000113 ORTHO05D001798 3.4e-08 62.4 41 65.9
arahy.Tifrunner.gnm1.ann1.4TP3R5 Arachis hypogaea HOM05D000113 ORTHO05D001798 3.4e-08 62.4 38 68.4
arahy.Tifrunner.gnm1.ann1.YHQH5W Arachis hypogaea HOM05D000113 ORTHO05D001798 3.4e-08 62.4 38 68.4
unitig_60.g25786 Utricularia gibba HOM05D000113 ORTHO05D001798 3.4e-08 62.4 37 73.0
CSS0027215 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D001798 4.4e-08 62.0 41 63.4
Eucgr.E02662 Eucalyptus grandis HOM05D000113 ORTHO05D001798 4.4e-08 62.0 41 63.4
Medtr2g015320 Medicago truncatula HOM05D000113 ORTHO05D001798 4.4e-08 62.0 38 71.1
Duzib235G0852 Durio zibethinus HOM05D000113 ORTHO05D001798 5.8e-08 61.6 34 76.5
Atru.chr10.1736 Acer truncatum HOM05D000113 ORTHO05D001798 7.5e-08 61.2 41 65.9
Manes.17G052600 Manihot esculenta HOM05D000113 ORTHO05D001798 7.5e-08 61.2 42 59.5
Prupe.4G056700 Prunus persica HOM05D000113 ORTHO05D001798 7.5e-08 61.2 48 56.2
Ca_00411_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 9.8e-08 60.8 38 68.4
ClCG03G007910 Citrullus lanatus HOM05D000113 ORTHO05D001798 9.8e-08 60.8 38 71.1
ECA236G0415 Erigeron canadensis HOM05D000113 ORTHO05D001798 9.8e-08 60.8 38 71.1
Lj6g0016463 Lotus japonicus HOM05D000113 ORTHO05D001798 9.8e-08 60.8 38 68.4
PGR042G0655 Punica granatum HOM05D000113 ORTHO05D001798 9.8e-08 60.8 41 65.9
TPR.G11663 Trifolium pratense HOM05D000113 ORTHO05D001798 9.8e-08 60.8 38 68.4
SGA_v2.0_scaffold1G00001 Striga asiatica HOM05D000965 ORTHO05D001798 1.3e-07 60.5 37 70.3
SGA_v2.0_scaffold440G51660 Striga asiatica HOM05D000113 ORTHO05D001798 1.3e-07 60.5 37 70.3
Lalb_Chr15g0089551 Lupinus albus HOM05D000113 ORTHO05D001798 1.7e-07 60.1 42 59.5
CiPaw.09G066700 Carya illinoinensis HOM05D000113 ORTHO05D001798 2.2e-07 59.7 41 61.0
Migut.M01073 Erythranthe guttata HOM05D000113 ORTHO05D001798 2.2e-07 59.7 37 70.3
Glyma.13G232900 Glycine max HOM05D000113 ORTHO05D001798 2.2e-07 59.7 38 65.8
Hma1.2p1_0155F.1_g068480 Hydrangea macrophylla HOM05D000113 ORTHO05D001798 2.2e-07 59.7 41 61.0
VMungo0540G1745 Vigna mungo HOM05D000113 ORTHO05D001798 2.2e-07 59.7 38 65.8
GSVIVG01021163001 Vitis vinifera HOM05D000113 ORTHO05D001798 2.2e-07 59.7 41 61.0
FvH4_5g21450 Fragaria vesca HOM05D000113 ORTHO05D001798 2.9e-07 59.3 48 56.2
FAN08G2639 Fragaria x ananassa HOM05D000113 ORTHO05D001798 2.9e-07 59.3 48 56.2
FAN18G3199 Fragaria x ananassa HOM05D000113 ORTHO05D001798 2.9e-07 59.3 48 56.2
Potri.004G052700 Populus trichocarpa HOM05D000113 ORTHO05D001798 2.9e-07 59.3 41 61.0
Sabra04G0034100 Salix brachista HOM05D000113 ORTHO05D001798 2.9e-07 59.3 41 61.0
RcHm_v2.0_Chr5g0009991 Rosa chinensis HOM05D000113 ORTHO05D001798 3.7e-07 58.9 48 54.2
A01p10440 Brassica napus HOM05D000113 ORTHO05D001798 4.9e-07 58.5 41 63.4
C01p12420 Brassica napus HOM05D000113 ORTHO05D001798 4.9e-07 58.5 41 63.4
BraA01t00990Z Brassica rapa HOM05D000113 ORTHO05D001798 4.9e-07 58.5 41 63.4
Carub.0007s2276 Capsella rubella HOM05D000113 ORTHO05D001798 4.9e-07 58.5 41 63.4
FAN13G0139 Fragaria x ananassa HOM05D000113 ORTHO05D001798 4.9e-07 58.5 48 54.2
Aa31LG6G1220 Aethionema arabicum HOM05D000113 ORTHO05D001798 6.4e-07 58.2 41 61.0
BcaC09g51504 Brassica carinata HOM05D000113 ORTHO05D001798 6.4e-07 58.2 41 61.0
BcaNung05873 Brassica carinata HOM05D000113 ORTHO05D001798 6.4e-07 58.2 41 61.0
BolC1t01216H Brassica oleracea HOM05D000113 ORTHO05D001798 6.4e-07 58.2 41 61.0
ATR0602G052 Amborella trichopoda HOM05D000113 ORTHO05D001798 8.3e-07 57.8 41 63.4
CDE04G2218 Ceratophyllum demersum HOM05D000113 ORTHO05D001798 8.3e-07 57.8 49 57.1
Thhalv10024567m.g Eutrema salsugineum HOM05D000113 ORTHO05D001798 8.3e-07 57.8 41 63.4
Phvul.006G179000 Phaseolus vulgaris HOM05D000113 ORTHO05D001798 8.3e-07 57.8 38 65.8
MD05G1305600 Malus domestica HOM05D000113 ORTHO05D001798 1.1e-06 57.4 48 50.0
Psat1g200640 Pisum sativum HOM05D000113 ORTHO05D001798 1.4e-06 57.0 38 65.8
HPP92_002846 Vanilla planifolia HOM05D000113 ORTHO05D001798 1.4e-06 57.0 38 60.5
RcHm_v2.0_Chr2g0158101 Rosa chinensis HOM05D000113 ORTHO05D001798 1.9e-06 56.6 42 59.5
Sp7g15550 Schrenkiella parvula HOM05D000113 ORTHO05D001798 1.9e-06 56.6 35 71.4
THA.LOC104806145 Tarenaya hassleriana HOM05D000113 ORTHO05D001798 1.9e-06 56.6 41 58.5
vmacro15958 Vaccinium macrocarpon HOM05D000113 ORTHO05D001798 1.9e-06 56.6 41 58.5
AL7G35810 Arabidopsis lyrata HOM05D000113 ORTHO05D001798 4.1e-06 55.5 41 58.5
AT4G18465 Arabidopsis thaliana HOM05D000113 ORTHO05D001798 4.1e-06 55.5 41 58.5
PSO210G4174 Papaver somniferum HOM05D000113 ORTHO05D001798 4.1e-06 55.5 38 63.2
PSO832G2438 Papaver somniferum HOM05D000113 ORTHO05D001798 4.1e-06 55.5 38 63.2
Rhsim02G0139000 Rhododendron simsii HOM05D000113 ORTHO05D001798 9.2e-06 54.3 41 56.1


User provided reference genes

Program Settings