Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 7.7e-30 133.7 95 100.0
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 1.6e-19 99.4 58 84.5
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 5.2e-18 94.4 62 79.0
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 5.7e-17 90.9 55 83.6
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 9.8e-17 90.1 60 75.0
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 3.7e-16 88.2 64 70.3
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 4.8e-16 87.8 61 73.8
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 1.1e-15 86.7 55 80.0
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 1.1e-15 86.7 55 78.2
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 1.1e-15 86.7 55 78.2
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 1.4e-15 86.3 59 69.5
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 1.4e-15 86.3 56 73.2
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 1.4e-15 86.3 55 78.2
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 1.8e-15 85.9 57 70.2
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 3.1e-15 85.1 55 78.2
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 3.1e-15 85.1 57 71.9
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 5.4e-15 84.3 57 68.4
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 5.4e-15 84.3 57 70.2
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 7.0e-15 84.0 58 69.0
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 7.0e-15 84.0 54 77.8
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 7.0e-15 84.0 54 77.8
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 7.0e-15 84.0 63 66.7
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 9.1e-15 83.6 59 69.5
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 9.1e-15 83.6 57 70.2
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 1.2e-14 83.2 58 72.4
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 1.6e-14 82.8 62 72.6
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 1.6e-14 82.8 58 67.2
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 1.6e-14 82.8 61 72.1
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.0e-14 82.4 54 75.9
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 2.7e-14 82.0 55 74.5
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 2.7e-14 82.0 53 75.5
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 2.7e-14 82.0 57 70.2
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 2.7e-14 82.0 63 63.5
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 3.5e-14 81.6 55 74.5
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 4.5e-14 81.3 59 66.1
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 4.5e-14 81.3 61 63.9
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 4.5e-14 81.3 53 71.7
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 4.5e-14 81.3 58 72.4
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 5.9e-14 80.9 53 75.5
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 7.7e-14 80.5 59 67.8
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 7.7e-14 80.5 54 74.1
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 7.7e-14 80.5 54 74.1
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 1.0e-13 80.1 60 70.0
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 1.0e-13 80.1 55 69.1
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 1.0e-13 80.1 61 63.9
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 1.0e-13 80.1 54 70.4
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 1.3e-13 79.7 58 65.5
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 1.7e-13 79.3 59 67.8
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 2.3e-13 79.0 59 64.4
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 3.8e-13 78.2 59 66.1
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 3.8e-13 78.2 59 66.1
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 3.8e-13 78.2 59 66.1
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 3.8e-13 78.2 59 66.1
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 5.0e-13 77.8 54 72.2
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 5.0e-13 77.8 54 72.2
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 5.0e-13 77.8 55 70.9
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 5.0e-13 77.8 53 67.9
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 5.0e-13 77.8 60 66.7
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 6.5e-13 77.4 59 64.4
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 6.5e-13 77.4 58 67.2
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 6.5e-13 77.4 54 70.4
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 6.5e-13 77.4 59 64.4
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 1.1e-12 76.6 58 63.8
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 1.9e-12 75.9 55 65.5
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 3.2e-12 75.1 59 64.4
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 4.2e-12 74.7 59 66.1
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 7.2e-12 73.9 50 72.0
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 2.1e-11 72.4 66 56.1
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 2.1e-11 72.4 72 52.8
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 2.1e-11 72.4 55 69.1
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 4.7e-11 71.2 57 63.2
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.2e-09 66.6 54 61.1
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 1.5e-09 66.2 54 64.8
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 9.8e-09 63.5 62 46.8
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 2.2e-08 62.4 48 68.8
Zm00001eb260130 Zea mays HOM05D007991 ORTHO05D010158 3.5e-06 55.1 56 51.8


User provided reference genes

Program Settings