Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 8.2e-222 773.5 406 100.0
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.8e-198 694.5 412 89.8
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.4e-189 666.4 409 86.8
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 2.4e-189 665.6 413 86.2
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.8e-181 639.4 413 80.4
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 3.1e-181 638.6 411 81.3
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.1e-181 638.3 411 82.0
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.0e-180 636.0 412 81.3
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 5.9e-180 634.4 420 78.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.7e-179 632.9 411 80.5
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 3.8e-179 631.7 412 79.9
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.5e-178 629.8 412 80.3
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 3.3e-178 628.6 411 80.3
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 4.3e-178 628.2 411 79.3
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.3e-178 627.5 409 80.4
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.8e-177 625.5 412 79.4
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.4e-176 623.2 405 79.8
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.4e-176 623.2 406 79.6
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 3.0e-176 622.1 414 79.2
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.0e-176 622.1 411 78.8
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 5.2e-176 621.3 416 79.1
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.2e-175 620.2 411 79.8
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.5e-175 619.8 410 79.0
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 2.0e-175 619.4 405 79.5
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 5.8e-175 617.8 412 78.9
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.5e-175 617.5 406 79.1
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 7.5e-175 617.5 411 78.8
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.3e-174 616.7 410 79.3
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.7e-174 616.3 410 79.0
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.8e-173 612.8 411 77.9
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.8e-173 612.8 411 77.9
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.8e-173 612.8 411 78.3
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 7.0e-173 610.9 406 78.3
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 7.0e-173 610.9 412 78.6
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 9.2e-173 610.5 405 78.8
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.6e-172 609.8 411 77.4
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.0e-172 609.4 411 77.1
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.0e-172 609.4 413 78.0
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.0e-172 609.4 411 77.9
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 2.7e-172 609.0 410 77.8
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.5e-172 608.6 411 77.9
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.6e-172 608.2 419 76.6
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 7.8e-172 607.4 412 78.9
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 2.3e-171 605.9 415 76.1
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 3.9e-171 605.1 408 79.2
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 3.9e-171 605.1 408 78.4
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 5.0e-171 604.7 420 76.4
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 8.6e-171 604.0 429 76.2
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.9e-170 602.8 411 77.4
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 9.5e-170 600.5 411 77.6
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.2e-169 600.1 411 77.1
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.1e-169 599.4 409 77.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.1e-169 599.4 448 73.7
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.8e-169 599.0 410 75.1
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 2.8e-169 599.0 408 78.4
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.6e-169 598.6 408 76.0
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.2e-169 597.8 415 75.9
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.1e-168 597.0 411 76.6
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.3e-168 595.9 410 75.6
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 6.8e-168 594.3 411 76.9
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 8.9e-168 594.0 414 76.3
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.9e-168 594.0 406 77.8
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.5e-167 593.2 410 75.4
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 7.5e-167 590.9 413 74.6
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 7.5e-167 590.9 410 75.4
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.3e-166 590.1 416 75.0
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.7e-166 589.7 422 75.1
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 4.9e-166 588.2 415 74.5
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 6.4e-166 587.8 406 75.6
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 8.3e-166 587.4 409 74.6
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.3e-166 587.4 422 74.9
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.4e-165 585.9 409 74.8
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.2e-165 585.5 411 74.5
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.2e-165 585.5 415 73.5
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 5.4e-165 584.7 409 77.3
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 7.0e-165 584.3 422 74.2
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.2e-164 583.6 430 73.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.0e-164 581.3 442 71.7
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 7.8e-164 580.9 411 73.2
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.3e-163 580.1 442 71.5
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.7e-163 579.7 411 73.0
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.9e-163 578.6 410 75.6
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 5.0e-163 578.2 419 73.7
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 8.6e-163 577.4 409 72.6
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.5e-162 575.9 410 74.1
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.3e-162 575.5 410 74.1
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.3e-162 575.5 409 74.1
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.3e-162 575.5 411 72.5
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 9.5e-162 573.9 359 84.4
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.2e-161 573.5 409 72.6
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.1e-160 570.5 421 72.7
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.1e-160 570.5 416 72.6
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 4.0e-160 568.5 415 74.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 3.4e-159 565.5 415 72.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 9.9e-159 563.9 424 70.8
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-158 563.5 410 72.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 6.4e-158 561.2 416 72.6
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 4.3e-154 548.5 388 74.2
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 6.2e-153 544.7 337 83.1
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.7e-150 536.6 415 68.9
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 3.2e-149 532.3 348 77.6
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.0e-147 525.8 379 73.6
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.0e-147 525.8 379 73.6
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.1e-146 523.9 478 63.8
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.1e-146 523.9 478 63.8
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.0e-144 515.4 412 68.4
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 4.0e-144 515.4 343 78.1
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.1e-140 503.1 316 80.4
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 4.0e-136 488.8 415 65.8
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 5.8e-135 485.0 355 73.0
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.1e-130 470.7 418 59.1
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 5.6e-130 468.4 411 63.0
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 2.7e-124 449.5 425 56.2
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 3.7e-121 439.1 423 60.8
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 2.5e-114 416.4 402 60.7
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.3e-113 414.1 272 79.8
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.2e-108 397.5 385 55.6
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 5.3e-104 382.1 324 66.4
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.7e-103 378.3 359 62.7
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.5e-101 373.2 320 63.4
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.7e-84 315.8 414 44.2
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.4e-83 314.3 317 54.3
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.3e-78 297.7 421 42.0
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 9.4e-77 291.6 246 64.2
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 5.0e-70 269.2 469 37.5
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.1e-69 268.1 464 38.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.9e-62 243.0 326 45.1
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.6e-55 221.1 126 84.1
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 7.8e-55 218.8 131 82.4
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.7e-52 209.5 316 41.1
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 6.4e-49 199.1 351 36.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.4e-48 198.0 336 36.6
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.6e-44 184.5 114 79.8
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.6e-44 184.5 105 83.8
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.9e-41 173.7 131 69.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 9.2e-40 168.7 103 80.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.4e-34 149.8 120 70.0
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 3.8e-33 146.7 95 76.8
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.3e-25 121.7 129 54.3
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 4.6e-23 113.2 65 87.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.7e-22 111.3 58 84.5
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.1e-20 104.4 129 47.3
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 9.0e-19 99.0 101 58.4
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 9.9e-18 95.5 73 65.8
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.9e-13 81.3 49 83.7
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 9.6e-13 79.0 96 50.0
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 8.1e-12 75.9 101 39.6
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 2.4e-11 74.3 57 64.9
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 7.6e-10 69.3 52 63.5
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 2.9e-09 67.4 36 91.7
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 2.9e-09 67.4 36 91.7
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 2.9e-09 67.4 36 91.7
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 6.5e-09 66.2 44 70.5
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 8.4e-09 65.9 31 93.5
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.9e-08 64.7 51 64.7
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 4.2e-08 63.5 36 91.7
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 7.1e-08 62.8 52 63.5
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-07 61.2 42 73.8
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 1.8e-06 58.2 120 28.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 2.3e-06 57.8 40 70.0
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-06 57.8 120 28.3
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-06 57.8 120 28.3
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 3.0e-06 57.4 56 57.1
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 3.0e-06 57.4 120 28.3
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 3.0e-06 57.4 120 28.3
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 5.1e-06 56.6 120 28.3
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 8.7e-06 55.8 89 47.2
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 8.7e-06 55.8 64 51.6


User provided reference genes

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