Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.8e-262 908.7 460 100.0
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 2.1e-234 815.5 461 88.7
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.8e-225 785.8 464 88.1
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.2e-205 719.9 387 91.5
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.1e-201 706.8 473 75.9
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 9.3e-198 693.7 478 73.6
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 9.3e-198 693.7 475 73.7
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 2.7e-197 692.2 468 75.2
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.3e-196 689.1 477 73.6
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 2.3e-196 689.1 472 74.2
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 3.3e-195 685.3 477 73.4
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 5.7e-195 684.5 478 73.2
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 4.8e-194 681.4 479 72.9
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 4.8e-194 681.4 463 75.2
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 6.3e-194 681.0 394 84.5
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 4.1e-193 678.3 472 73.3
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 3.4e-192 675.2 471 73.2
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 3.4e-192 675.2 460 75.4
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.0e-191 673.7 384 85.2
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 2.9e-191 672.2 429 78.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 7.2e-190 667.5 476 72.5
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 3.6e-189 665.2 476 72.1
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 1.0e-188 663.7 379 83.9
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 2.3e-188 662.5 457 73.3
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.3e-188 662.5 459 72.5
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 5.1e-188 661.4 464 73.5
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.5e-187 659.8 472 72.2
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.0e-187 659.4 388 82.7
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 4.3e-187 658.3 532 65.2
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 4.3e-187 658.3 457 73.1
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 5.7e-187 657.9 440 75.7
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 7.4e-187 657.5 459 71.7
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.3e-186 656.8 402 81.1
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.3e-186 656.8 459 71.9
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.7e-186 656.4 460 72.0
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 3.7e-186 655.2 463 72.8
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 4.8e-186 654.8 461 71.8
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 8.2e-186 654.1 395 81.5
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.1e-185 653.7 443 72.9
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.1e-185 653.7 414 77.1
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.1e-185 653.7 415 77.8
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 1.4e-185 653.3 459 71.5
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 4.1e-185 651.7 412 78.2
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 5.3e-185 651.4 441 73.2
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 5.3e-185 651.4 380 82.9
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 9.1e-185 650.6 472 70.3
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.2e-184 650.2 437 73.9
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.2e-184 650.2 415 75.4
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 2.0e-184 649.4 412 77.7
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 2.6e-184 649.0 439 73.3
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.4e-184 648.7 450 71.8
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 3.4e-184 648.7 454 72.5
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 3.4e-184 648.7 440 74.8
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 3.4e-184 648.7 451 72.1
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.4e-184 648.7 458 72.5
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 4.5e-184 648.3 455 69.7
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 4.5e-184 648.3 449 73.1
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 4.5e-184 648.3 459 71.9
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 7.7e-184 647.5 426 74.4
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.0e-183 647.1 449 73.3
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.0e-183 647.1 414 75.8
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.7e-183 646.4 450 72.0
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 2.2e-183 646.0 449 73.1
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 2.2e-183 646.0 421 76.5
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.8e-183 645.2 460 70.0
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.0e-183 644.8 428 74.1
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 5.0e-183 644.8 454 72.0
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 6.5e-183 644.4 378 81.7
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.5e-183 644.4 421 76.0
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 8.5e-183 644.0 421 76.0
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 8.5e-183 644.0 462 70.1
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.1e-182 643.7 404 76.7
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.4e-182 643.3 428 73.8
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.4e-182 643.3 414 76.6
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.9e-182 642.9 421 75.8
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.5e-182 642.5 462 69.7
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 2.5e-182 642.5 452 71.7
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.2e-182 641.0 460 71.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.4e-182 640.6 428 73.6
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 9.4e-182 640.6 377 81.7
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 1.6e-181 639.8 384 80.7
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.6e-181 639.8 429 73.9
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 2.1e-181 639.4 425 73.6
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 2.7e-181 639.0 410 76.1
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 4.7e-181 638.3 449 72.2
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 6.1e-181 637.9 423 73.3
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 6.1e-181 637.9 437 72.3
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 6.1e-181 637.9 413 75.3
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 7.9e-181 637.5 423 73.0
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.0e-180 637.1 434 72.6
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.4e-180 636.7 458 70.1
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 3.0e-180 635.6 382 80.4
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.0e-180 635.6 458 70.5
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 6.7e-180 634.4 386 79.5
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 6.7e-180 634.4 458 70.3
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 6.7e-180 634.4 456 70.0
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.5e-179 633.3 455 71.0
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.5e-179 633.3 438 71.9
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 9.7e-179 630.6 464 69.2
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.7e-178 629.8 388 78.1
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 9.4e-174 614.0 466 67.8
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 4.4e-171 605.1 410 74.6
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 7.0e-169 597.8 414 71.3
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.0e-167 594.0 403 71.5
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.2e-167 592.8 467 64.7
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.1e-158 563.9 460 63.9
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.2e-155 553.9 356 73.0
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.1e-153 545.8 376 73.1
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.2e-149 533.9 409 65.3
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 6.4e-146 521.5 446 62.3
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 7.8e-144 514.6 449 61.2
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 2.3e-143 513.1 392 63.5
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.6e-141 506.9 371 67.1
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 8.3e-138 494.6 345 72.2
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.6e-133 480.3 399 59.1
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 2.1e-133 479.9 423 60.8
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.1e-132 477.6 360 64.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.4e-132 477.2 384 59.4
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-128 464.2 316 73.1
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.6e-128 463.8 357 64.1
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 6.4e-122 441.8 289 72.0
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 7.1e-121 438.3 276 74.6
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 4.6e-120 435.6 471 53.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.1e-118 431.0 300 71.7
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.0e-111 407.9 258 76.0
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.0e-111 407.9 318 65.1
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 3.0e-111 406.4 326 63.2
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.3e-106 391.0 333 63.4
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 8.4e-106 388.3 346 63.0
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 2.0e-99 367.1 356 52.5
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 5.6e-94 349.0 329 52.9
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.6e-93 347.4 329 59.6
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 2.4e-92 343.6 212 79.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.0e-87 328.2 218 75.2
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.6e-85 320.9 195 74.4
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 3.1e-84 316.6 228 71.9
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.1e-73 281.6 202 68.3
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.4e-71 274.6 174 76.4
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 5.5e-65 252.7 185 67.0
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 4.4e-62 243.0 353 40.8
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 1.3e-61 241.5 185 64.9
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 4.8e-61 239.6 124 85.5
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 7.2e-57 225.7 291 44.3
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 2.3e-55 220.7 137 79.6
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 2.2e-45 187.6 134 69.4
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.3e-37 161.8 157 58.6
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.8e-37 160.6 112 75.0
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.7e-34 151.4 113 72.6
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.7e-34 151.4 112 68.8
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.3e-34 151.0 85 78.8
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 6.0e-27 126.3 77 87.0
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 9.8e-22 109.0 86 64.0
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.4e-20 105.1 93 58.1
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 1.6e-19 101.7 117 50.4
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.5e-17 95.1 62 83.9
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 4.7e-16 90.1 68 69.1
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 1.8e-15 88.2 62 77.4
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 4.0e-15 87.0 50 80.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.3e-13 82.0 58 60.3
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 7.3e-09 66.2 44 65.9
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 6.2e-08 63.2 220 25.5
QL09p046950 Quercus lobata HOM05D004538 ORTHO05D337738 7.6e-06 56.2 31 80.6


User provided reference genes

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