Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 7.0e-113 410.6 205 100.0
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 6.2e-101 370.9 204 91.2
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 4.0e-92 341.7 202 84.7
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 2.6e-91 339.0 207 81.6
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 2.8e-85 318.9 202 78.7
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 9.0e-84 313.9 207 76.3
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.3e-82 310.1 205 74.6
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 3.8e-82 308.5 204 76.0
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.2e-80 303.5 202 74.8
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.6e-80 303.1 202 75.7
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 3.5e-80 302.0 204 72.5
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 4.6e-80 301.6 205 74.1
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.0e-79 300.4 201 74.6
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.0e-79 300.4 201 74.1
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.8e-79 299.7 202 73.8
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.3e-79 299.3 201 73.6
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 3.0e-79 298.9 202 75.2
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 5.1e-79 298.1 203 72.9
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 6.7e-79 297.7 203 73.4
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.7e-79 297.7 204 73.5
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.1e-78 297.0 201 71.6
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.1e-78 297.0 203 73.9
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.5e-78 296.6 203 73.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 72.9
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.3e-78 295.4 204 73.0
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 4.3e-78 295.0 203 72.4
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 4.3e-78 295.0 201 73.6
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 5.6e-78 294.7 203 72.9
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 5.6e-78 294.7 204 72.5
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 7.4e-78 294.3 203 71.9
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 7.4e-78 294.3 208 69.7
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 7.4e-78 294.3 202 71.3
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.3e-77 293.5 203 71.9
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.3e-77 293.5 204 72.5
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.6e-77 293.1 203 71.4
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.1e-77 292.7 203 70.0
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.1e-77 292.7 203 71.9
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.1e-77 292.7 203 71.9
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.8e-77 292.4 204 70.1
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 4.8e-77 291.6 204 72.1
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 8.1e-77 290.8 204 72.1
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.1e-76 290.4 199 72.4
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.4e-76 290.0 202 72.3
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 2.4e-76 289.3 203 71.9
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.4e-76 289.3 202 71.8
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.4e-76 289.3 199 71.9
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 3.1e-76 288.9 202 71.3
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.0e-76 288.5 203 70.9
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 4.0e-76 288.5 200 73.0
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.3e-76 288.1 203 70.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 5.3e-76 288.1 206 68.4
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 9.0e-76 287.3 204 70.1
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 1.2e-75 287.0 205 71.2
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.5e-75 286.6 202 69.3
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 2.6e-75 285.8 204 69.1
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.8e-75 284.6 201 70.1
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.3e-74 283.5 204 70.6
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.3e-74 283.5 195 72.3
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.7e-74 283.1 202 69.8
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.7e-74 283.1 206 67.0
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.7e-74 283.1 206 67.0
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 1.7e-74 283.1 202 68.8
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 4.9e-74 281.6 200 71.5
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 6.4e-74 281.2 199 69.3
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 6.4e-74 281.2 200 71.5
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 6.4e-74 281.2 202 67.3
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.1e-73 280.4 204 71.1
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.4e-73 280.0 200 71.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.4e-73 280.0 193 71.5
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 1.9e-73 279.6 208 67.3
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 2.4e-73 279.3 204 67.2
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 3.2e-73 278.9 208 66.8
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 3.2e-73 278.9 208 66.8
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 4.2e-73 278.5 208 65.9
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.5e-73 278.1 200 70.5
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.5e-73 278.1 200 70.5
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 5.5e-73 278.1 199 68.3
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 9.3e-73 277.3 203 67.5
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.2e-72 276.9 208 65.9
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.2e-72 276.9 208 65.9
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.6e-72 276.6 202 67.3
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 2.1e-72 276.2 208 66.3
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.7e-72 275.8 202 66.8
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 7.9e-72 274.2 204 66.7
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 7.9e-72 274.2 203 66.5
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 7.9e-72 274.2 203 69.0
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.0e-71 273.9 208 65.9
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-71 273.9 204 69.1
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.0e-71 273.9 199 68.8
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.3e-71 273.5 226 62.8
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.8e-71 273.1 203 66.5
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.3e-71 272.7 203 70.0
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 2.3e-71 272.7 208 66.3
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 2.3e-71 272.7 208 66.3
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 2.3e-71 272.7 208 66.3
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 3.0e-71 272.3 208 66.3
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.9e-71 271.9 204 66.2
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.1e-71 271.6 208 66.3
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 5.1e-71 271.6 200 67.5
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 6.7e-71 271.2 204 65.2
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 6.7e-71 271.2 204 65.2
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 6.7e-71 271.2 202 67.3
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 8.7e-71 270.8 208 65.9
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 9.6e-70 267.3 194 69.6
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.3e-69 266.9 203 68.0
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 2.1e-69 266.2 203 68.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.7e-69 265.4 203 67.5
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.7e-69 265.4 204 65.2
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 4.8e-69 265.0 258 55.4
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 4.8e-69 265.0 206 63.1
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 8.1e-69 264.2 218 61.5
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.8e-68 263.1 204 64.7
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.1e-65 253.8 203 66.0
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.1e-65 253.8 202 64.4
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.3e-61 240.4 194 64.4
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.6e-61 240.0 203 61.1
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 3.1e-60 235.7 199 56.8
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 8.5e-58 227.6 201 55.7
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 3.3e-54 215.7 202 52.5
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 9.1e-52 207.6 141 75.9
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 7.7e-51 204.5 209 52.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.0e-50 201.8 143 72.0
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.0e-50 201.8 213 50.7
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.4e-49 200.3 204 54.9
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.7e-48 196.1 146 67.1
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.6e-48 195.7 147 68.0
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 4.6e-48 195.3 205 52.7
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.0e-47 194.1 138 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.5e-43 180.3 200 48.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-41 174.1 147 63.3
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 7.9e-40 167.9 146 61.6
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 9.1e-36 154.5 126 64.3
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.0e-34 151.0 181 49.7
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 2.2e-26 123.2 195 40.5
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 7.2e-25 118.2 194 37.1
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 6.1e-24 115.2 124 49.2
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 3.0e-23 112.8 99 57.6
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.0e-23 112.5 66 80.3
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 2.0e-22 110.2 198 35.4
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.4e-22 109.4 70 68.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.1e-20 102.8 135 45.2
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 1.0e-18 97.8 69 65.2
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.8e-16 89.7 68 75.0
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 7.5e-14 81.6 50 74.0
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.3e-10 70.1 64 59.4
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 2.3e-10 70.1 75 56.0
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.6e-08 62.8 48 68.8
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.6e-08 62.8 48 68.8
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 6.1e-08 62.0 119 32.8
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.0e-07 59.7 66 54.5
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 5.2e-07 58.9 37 62.2


User provided reference genes

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