Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-161 571.6 279 100.0
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-161 571.6 279 100.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-126 456.4 265 87.5
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-126 456.4 265 87.5
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-126 456.4 265 87.5
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-126 456.4 265 87.5
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 7.6e-126 454.1 289 80.6
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-121 440.3 265 84.9
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.8e-120 435.6 261 85.4
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.4e-116 423.3 265 81.1
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.1e-115 419.5 265 81.5
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-114 416.8 266 81.6
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-114 416.8 266 81.6
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-114 416.8 266 81.6
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.9e-114 415.2 292 75.0
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.9e-114 415.2 292 75.0
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 6.6e-114 414.5 292 75.0
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 6.6e-114 414.5 292 75.0
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 9.6e-113 410.6 292 74.3
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 9.6e-113 410.6 293 74.7
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-112 410.2 243 86.0
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.3e-112 410.2 292 74.0
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.1e-112 409.5 292 74.0
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.1e-112 409.5 292 74.0
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.1e-111 407.1 293 74.1
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 4.5e-110 401.7 292 73.3
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 4.5e-110 401.7 292 73.3
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 7.6e-110 401.0 266 78.9
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 2.2e-109 399.4 318 69.5
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.9e-109 399.1 292 72.3
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 6.4e-109 397.9 294 72.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 8.4e-109 397.5 293 72.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.9e-108 396.4 293 73.0
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 2.4e-108 396.0 265 78.1
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 4.2e-108 395.2 242 83.9
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.4e-108 394.8 255 80.8
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 9.3e-108 394.0 292 72.3
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 5.1e-106 388.3 275 74.9
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.3e-104 383.6 259 77.6
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.1e-103 380.6 289 72.0
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.8e-103 379.8 266 75.9
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.0e-103 378.6 266 74.4
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 5.3e-103 378.3 292 70.9
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 4.9e-101 371.7 294 70.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 5.5e-100 368.2 322 64.9
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 5.5e-100 368.2 322 64.9
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 5.5e-100 368.2 322 64.9
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 5.5e-100 368.2 322 64.9
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 5.5e-100 368.2 322 64.9
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 5.5e-100 368.2 322 64.9
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-97 360.1 244 78.7
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.5e-89 332.8 217 80.2
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 3.3e-89 332.4 239 74.5
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.2e-86 323.9 260 68.8
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.2e-85 319.7 259 68.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.1e-83 311.6 271 65.3
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.9e-81 306.6 273 61.9
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 2.8e-80 302.8 192 81.2
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.6e-78 296.2 204 76.5
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 4.6e-75 285.4 240 65.0
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 4.6e-75 285.4 288 57.6
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.1e-73 280.8 206 69.9
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 5.3e-71 271.9 201 69.7
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 5.3e-71 271.9 201 69.7
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.0e-70 270.0 201 69.2
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 2.2e-69 266.5 177 76.3
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 6.5e-69 265.0 173 77.5
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.1e-67 260.0 219 63.5
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.8e-66 256.9 193 68.9
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 6.7e-66 255.0 177 73.4
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.8e-63 246.9 143 87.4
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 9.1e-63 244.6 143 86.7
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-62 243.8 216 63.9
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 5.9e-62 241.9 204 66.2
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.9e-60 236.9 175 73.7
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 5.5e-60 235.3 256 53.1
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.0e-58 231.1 182 70.3
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 3.0e-58 229.6 256 52.3
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 9.7e-57 224.6 191 64.4
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 8.2e-56 221.5 256 50.8
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.6e-54 217.2 144 76.4
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.6e-54 217.2 138 83.3
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 3.2e-52 209.5 121 87.6
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.0e-50 204.5 164 69.5
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.3e-50 203.4 122 84.4
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 3.0e-50 203.0 173 63.6
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 3.0e-50 203.0 173 63.6
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 5.2e-50 202.2 103 94.2
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-47 194.5 150 72.0
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.8e-47 193.7 226 53.5
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 2.4e-47 193.4 129 74.4
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 5.4e-47 192.2 103 88.3
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 9.1e-47 191.4 162 64.2
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-43 180.3 148 67.6
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 6.1e-43 178.7 121 74.4
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.5e-41 174.1 163 60.1
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.4e-41 172.6 163 59.5
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 2.2e-40 170.2 96 88.5
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.0e-37 159.1 273 43.2
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-36 157.5 101 81.2
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 9.5e-36 154.8 95 84.2
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 2.1e-35 153.7 91 82.4
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 8.0e-35 151.8 97 84.5
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 2.0e-33 147.1 89 86.5
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.3e-32 144.4 116 72.4
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.7e-32 144.1 89 85.4
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.7e-32 144.1 89 85.4
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-32 144.1 89 85.4
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 4.9e-32 142.5 89 84.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 6.4e-32 142.1 89 84.3
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.1e-31 141.4 89 83.1
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 7.0e-31 138.7 101 68.3
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-30 136.7 79 87.3
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.2e-26 122.5 172 45.9
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 5.2e-26 122.5 66 89.4
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-25 121.3 189 45.0
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.4e-25 119.4 101 69.3
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 7.5e-25 118.6 63 88.9
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.7e-24 117.5 76 77.6
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 4.9e-24 115.9 98 58.2
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 3.0e-21 106.7 62 82.3
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 1.6e-19 100.9 82 62.2
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 7.5e-17 92.0 172 39.0
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 2.4e-15 87.0 58 72.4
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 6.0e-14 82.4 55 67.3
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.6e-13 78.6 49 69.4
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 1.1e-12 78.2 47 80.9
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-12 78.2 114 43.9
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 9.5e-12 75.1 51 72.5
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-10 71.6 225 32.0
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.4e-10 71.2 36 91.7
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-10 71.2 254 28.3
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 6.8e-10 68.9 50 60.0
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.5e-09 67.8 34 91.2
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-08 64.3 113 38.1
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 4.9e-08 62.8 54 59.3
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 7.1e-07 58.9 69 49.3
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.1e-07 58.9 37 67.6
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 3.5e-06 56.6 34 73.5
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.0e-06 55.8 29 86.2


User provided reference genes

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