Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 2.3e-119 432.2 207 100.0
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 2.3e-119 432.2 207 100.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 6.4e-106 387.5 191 96.3
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.4e-106 387.5 191 96.3
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 6.4e-106 387.5 191 96.3
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 6.4e-106 387.5 191 96.3
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-103 379.8 191 93.7
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-102 376.7 191 94.2
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 3.8e-90 335.1 194 84.0
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.0e-90 334.7 191 85.3
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-89 332.0 192 83.9
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-89 332.0 192 83.9
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 9.3e-89 330.5 194 82.5
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 9.3e-89 330.5 194 82.5
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-88 330.1 202 80.7
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.6e-88 329.7 191 84.8
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 4.6e-88 328.2 191 83.8
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 4.6e-88 328.2 191 83.8
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.1e-88 327.8 191 82.2
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.9e-88 327.4 195 83.1
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.3e-87 326.6 192 83.3
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.8e-87 326.2 191 81.7
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 8.8e-87 323.9 193 81.9
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.3e-85 320.1 191 81.7
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.4e-84 316.6 192 79.2
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 1.4e-84 316.6 192 79.2
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-84 316.6 192 79.2
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.1e-84 315.5 192 81.2
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 2.0e-83 312.8 178 82.6
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.0e-83 312.8 192 79.2
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 5.9e-83 311.2 191 80.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.7e-82 309.7 175 82.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.9e-82 308.9 195 79.0
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 5.0e-82 308.1 175 82.3
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 9.4e-81 303.9 194 78.4
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 9.4e-81 303.9 194 78.4
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 3.6e-80 302.0 196 77.6
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.6e-80 302.0 202 75.7
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 7.9e-80 300.8 217 70.0
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-77 293.1 196 76.5
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.2e-77 292.7 171 81.9
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.2e-77 290.8 192 76.0
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.2e-77 290.8 192 76.0
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 5.9e-75 284.6 191 75.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.4e-73 280.0 194 73.7
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.4e-73 280.0 194 73.7
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.4e-73 280.0 194 73.7
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.4e-73 280.0 194 73.7
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.4e-73 280.0 194 73.7
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.4e-73 280.0 194 73.7
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 2.5e-73 279.3 164 82.3
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.6e-72 275.4 194 72.2
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.1e-72 274.6 160 83.1
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 9.7e-70 267.3 194 71.1
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.3e-63 246.1 191 67.0
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.2e-58 229.6 120 91.7
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 4.7e-56 221.9 142 72.5
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 1.4e-55 220.3 119 83.2
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-54 216.9 147 72.8
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 8.3e-53 211.1 122 79.5
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.1e-48 196.4 122 79.5
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 6.3e-45 184.9 114 81.6
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.8e-44 183.3 97 86.6
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.8e-44 183.3 97 86.6
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 1.6e-43 180.3 105 81.9
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-43 180.3 192 54.2
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 7.8e-43 177.9 125 74.4
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 6.6e-42 174.9 125 74.4
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 2.3e-39 166.4 191 51.8
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.9e-36 156.8 96 79.2
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.1e-36 155.6 121 71.1
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 6.8e-31 138.3 171 48.0
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-22 110.9 110 57.3
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 1.0e-18 97.8 70 65.7
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 6.6e-18 95.1 71 66.2
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-16 89.7 48 81.2
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 5.2e-15 85.5 50 82.0
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 3.8e-13 79.3 51 78.4
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 5.4e-12 75.5 50 72.0
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 5.1e-10 68.9 29 100.0


User provided reference genes

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