Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 0.0e+00 1491.1 813 100.0
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 1.1e-206 724.2 884 54.2
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 1.8e-164 583.9 919 46.1
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.9e-129 467.6 972 39.7
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 3.6e-128 463.4 1019 38.9
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 6.2e-128 462.6 969 39.9
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 3.1e-127 460.3 963 41.5
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 4.0e-127 459.9 952 39.4
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.5e-126 458.0 1009 40.0
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.5e-126 458.0 927 40.3
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.4e-126 456.8 1009 40.0
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 3.4e-126 456.8 932 39.3
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 5.4e-124 449.5 921 39.3
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 1.0e-122 445.3 989 39.8
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 5.1e-122 443.0 945 40.7
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 8.7e-122 442.2 971 39.4
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.1e-121 441.8 982 40.4
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 4.3e-121 439.9 931 39.8
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 3.6e-120 436.8 974 39.7
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.2e-120 436.0 933 38.6
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.2e-118 431.8 931 39.0
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 1.5e-118 431.4 972 38.1
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.4e-118 430.3 929 39.8
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 5.8e-118 429.5 880 37.6
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 9.9e-118 428.7 933 39.2
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 1.7e-117 427.9 971 38.4
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 8.4e-117 425.6 1005 37.5
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 8.7e-114 415.6 1080 38.3
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 5.6e-113 412.9 985 37.2
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 7.3e-113 412.5 955 37.3
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 4.8e-112 409.8 963 39.0
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.1e-111 408.7 941 36.8
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 5.3e-111 406.4 945 38.6
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.2e-110 405.2 949 38.7
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.6e-110 404.1 1023 36.6
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 7.6e-110 402.5 952 36.8
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 8.4e-109 399.1 892 37.4
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 9.3e-108 395.6 953 38.0
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 2.7e-107 394.0 930 38.4
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 4.6e-107 393.3 952 37.9
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 6.0e-107 392.9 898 38.0
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 1.0e-106 392.1 890 38.7
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 1.3e-106 391.7 959 36.7
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 3.3e-105 387.1 982 36.4
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 2.1e-104 384.4 948 37.3
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 3.7e-104 383.6 950 36.8
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 3.7e-104 383.6 977 36.1
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 3.7e-104 383.6 955 36.6
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 6.2e-104 382.9 986 35.4
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.4e-103 381.7 955 36.2
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 1.5e-102 378.3 922 37.3
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 1.5e-102 378.3 932 37.9
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 5.8e-102 376.3 956 35.9
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 2.2e-101 374.4 831 39.7
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 4.2e-100 370.2 931 36.1
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 5.5e-100 369.8 857 38.6
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 1.2e-99 368.6 948 36.1
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 2.1e-99 367.9 901 37.8
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 4.6e-99 366.7 848 36.4
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 4.6e-99 366.7 790 38.2
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.3e-98 364.4 921 36.9
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 8.7e-98 362.5 862 36.4
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 1.5e-97 361.7 961 35.7
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 1.9e-97 361.3 957 37.4
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 2.1e-96 357.8 911 36.0
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 9.0e-95 352.4 956 35.0
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.5e-94 351.7 862 37.2
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.7e-93 348.2 970 35.1
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.1e-92 345.5 824 36.8
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 4.2e-92 343.6 1002 36.0
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 4.2e-92 343.6 981 34.9
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 7.1e-92 342.8 997 34.5
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 2.1e-91 341.3 919 33.2
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 3.5e-91 340.5 909 35.2
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 3.5e-91 340.5 910 35.1
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.0e-90 337.4 993 34.4
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 3.0e-90 337.4 949 35.8
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 3.9e-90 337.0 967 35.6
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 8.7e-90 335.9 782 36.6
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 7.4e-89 332.8 781 37.9
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 9.7e-89 332.4 907 36.4
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 3.7e-88 330.5 917 34.7
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 6.3e-88 329.7 813 36.4
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 4.1e-87 327.0 803 36.2
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 5.3e-87 326.6 925 33.8
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 1.7e-85 321.6 922 33.6
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 8.5e-85 319.3 895 34.9
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 7.9e-83 312.8 1039 32.8
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 3.9e-82 310.5 853 35.6
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 1.5e-81 308.5 821 35.7
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 5.7e-81 306.6 1030 34.1
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.7e-80 305.1 1026 34.4
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.7e-80 305.1 931 34.4
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 2.2e-80 304.7 856 32.9
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 8.2e-80 302.8 897 35.1
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 1.4e-79 302.0 1002 31.5
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 9.1e-79 299.3 842 33.0
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 5.9e-78 296.6 762 35.2
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 8.8e-74 282.7 969 32.9
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 1.1e-73 282.3 1088 31.9
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 5.7e-73 280.0 753 33.9
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.3e-72 278.9 922 34.6
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 4.8e-72 276.9 744 36.2
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 4.1e-71 273.9 768 33.2
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 1.9e-68 265.0 874 33.4
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 1.6e-62 245.4 928 33.0
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 6.5e-61 240.0 898 31.0
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 6.8e-58 229.9 613 36.4
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 8.8e-58 229.6 851 33.4
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 1.6e-51 208.8 156 69.2
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 1.2e-46 192.6 155 67.1
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 4.3e-44 184.1 227 48.9
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.7e-43 180.6 448 34.4
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.0e-42 177.6 439 34.4
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 5.2e-42 177.2 154 64.3
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 5.6e-36 157.1 169 54.4
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 8.9e-34 149.8 764 29.7
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 1.1e-31 142.9 182 48.9
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 8.6e-29 133.3 161 49.7
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 7.3e-28 130.2 159 48.4
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 2.7e-22 111.7 979 27.2
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.7e-21 109.0 102 59.8
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 6.6e-21 107.1 98 60.2
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 8.9e-18 96.7 98 59.2
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.3e-16 92.8 292 36.6
Lsat_1_v5_gn_3_17641 Lactuca sativa HOM05D005351 ORTHO05D006542 1.9e-15 89.0 112 49.1
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 1.2e-14 86.3 74 58.1
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.5e-12 79.3 136 39.7
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 2.1e-11 75.5 331 31.7
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 3.4e-09 68.2 187 28.9
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 3.8e-08 64.7 59 64.4
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 3.2e-07 61.6 59 64.4
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 4.2e-07 61.2 564 23.2
Lsat_1_v5_gn_1_72981 Lactuca sativa HOM05D004596 ORTHO05D005853 5.4e-07 60.8 43 69.8
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 4.6e-06 57.8 30 76.7
ECA240G3950 Erigeron canadensis HOM05D005351 ORTHO05D000491 7.8e-06 57.0 52 63.5


User provided reference genes

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