Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 6.2e-146 520.8 264 100.0
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 3.6e-61 239.2 256 55.1
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.2e-33 146.4 347 34.6
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 7.9e-32 141.7 369 32.0
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 8.7e-31 138.3 294 33.0
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.5e-30 136.7 363 30.6
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 9.6e-30 134.8 132 54.5
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.1e-28 129.8 375 30.7
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 4.0e-28 129.4 275 34.2
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 2.6e-27 126.7 275 33.5
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.5e-27 125.9 366 28.7
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.8e-26 122.9 332 31.9
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.1e-25 121.3 305 31.8
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 2.4e-25 120.2 329 31.3
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 9.3e-25 118.2 307 31.3
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.6e-24 117.5 123 48.8
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.0e-23 114.8 362 29.6
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.3e-23 114.4 109 52.3
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 2.3e-23 113.6 117 48.7
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.0e-23 113.2 133 45.9
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 3.9e-23 112.8 296 31.1
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 8.7e-23 111.7 284 28.9
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.9e-22 110.5 191 38.7
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 4.3e-22 109.4 288 29.9
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 9.6e-22 108.2 314 28.3
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 2.8e-21 106.7 195 35.4
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.4e-20 104.4 93 52.7
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 2.4e-20 103.6 230 31.3
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.1e-20 103.2 306 28.1
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 4.0e-20 102.8 320 29.1
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 5.3e-20 102.4 94 53.2
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 6.9e-20 102.1 332 28.0
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 6.9e-20 102.1 207 31.9
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 9.0e-20 101.7 222 33.8
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 9.0e-20 101.7 151 40.4
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.5e-19 100.9 279 30.5
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.0e-19 100.5 258 29.5
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.4e-19 99.8 91 49.5
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 4.5e-19 99.4 249 32.5
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.0e-18 98.2 91 49.5
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.7e-18 97.4 375 26.9
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 2.2e-18 97.1 249 30.9
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 2.9e-18 96.7 260 29.6
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 6.5e-18 95.5 75 57.3
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 8.4e-18 95.1 261 28.0
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 1.1e-17 94.7 260 28.8
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.1e-17 94.7 92 51.1
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 1.1e-17 94.7 322 26.7
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 1.4e-17 94.4 80 51.2
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.5e-17 93.6 126 40.5
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 2.5e-17 93.6 269 28.3
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 3.2e-17 93.2 152 38.8
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 4.2e-17 92.8 75 54.7
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 5.5e-17 92.4 100 42.0
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 5.5e-17 92.4 117 41.9
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 5.5e-17 92.4 180 32.2
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 7.1e-17 92.0 222 32.0
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 7.1e-17 92.0 215 34.4
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 9.3e-17 91.7 249 30.5
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 9.3e-17 91.7 87 49.4
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.2e-16 91.3 110 39.1
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 2.1e-16 90.5 146 36.3
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 2.7e-16 90.1 84 48.8
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 2.7e-16 90.1 75 53.3
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 3.5e-16 89.7 347 26.8
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 3.5e-16 89.7 100 41.0
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.6e-16 89.4 98 44.9
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 7.9e-16 88.6 258 28.3
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 1.0e-15 88.2 89 44.9
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.0e-15 88.2 94 46.8
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.3e-15 87.8 108 36.1
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 1.3e-15 87.8 209 31.6
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.8e-15 87.4 86 41.9
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.8e-15 87.4 98 48.0
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.3e-15 87.0 129 37.2
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 2.3e-15 87.0 86 48.8
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 5.1e-15 85.9 166 31.3
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 5.1e-15 85.9 105 41.9
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 5.1e-15 85.9 141 37.6
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 8.7e-15 85.1 101 45.5
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.1e-14 84.7 113 41.6
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 1.1e-14 84.7 84 46.4
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.5e-14 84.3 89 43.8
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.9e-14 84.0 204 30.4
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 1.9e-14 84.0 94 42.6
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.5e-14 83.6 101 44.6
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.3e-14 83.2 142 35.2
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 4.3e-14 82.8 126 31.7
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 5.7e-14 82.4 98 39.8
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 5.7e-14 82.4 92 44.6
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 5.7e-14 82.4 102 43.1
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 7.4e-14 82.0 135 31.1
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 7.4e-14 82.0 99 39.4
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 7.4e-14 82.0 87 40.2
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 7.4e-14 82.0 86 47.7
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 9.6e-14 81.6 91 41.8
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 9.6e-14 81.6 106 37.7
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 1.3e-13 81.3 172 33.1
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.6e-13 80.9 101 37.6
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.1e-13 80.5 86 44.2
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.1e-13 80.5 106 38.7
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.8e-13 80.1 109 37.6
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 2.8e-13 80.1 93 39.8
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.8e-13 80.1 91 42.9
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 4.8e-13 79.3 373 24.7
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 4.8e-13 79.3 104 37.5
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.3e-13 79.0 86 43.0
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 6.3e-13 79.0 91 41.8
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 6.3e-13 79.0 88 38.6
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 6.3e-13 79.0 218 26.1
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 8.2e-13 78.6 147 32.7
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 1.1e-12 78.2 104 39.4
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.1e-12 78.2 77 41.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.4e-12 77.8 100 37.0
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.4e-12 77.8 103 35.0
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.4e-12 77.8 86 39.5
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.8e-12 77.4 105 39.0
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.8e-12 77.4 77 46.8
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 1.8e-12 77.4 87 41.4
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 2.4e-12 77.0 94 41.5
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 2.4e-12 77.0 86 38.4
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 4.1e-12 76.3 84 41.7
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 5.3e-12 75.9 142 33.8
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.9e-12 75.5 89 42.7
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 9.0e-12 75.1 88 39.8
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.5e-11 74.3 87 39.1
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.5e-11 74.3 111 34.2
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 2.0e-11 73.9 85 38.8
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.0e-11 73.9 115 33.9
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 2.0e-11 73.9 95 38.9
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.0e-11 73.9 83 39.8
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.6e-11 73.6 200 28.0
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 3.4e-11 73.2 84 39.3
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.4e-11 73.2 84 41.7
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 3.4e-11 73.2 128 35.2
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 4.5e-11 72.8 88 42.0
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.5e-11 72.8 177 28.8
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 4.5e-11 72.8 117 29.9
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 5.9e-11 72.4 79 38.0
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 7.6e-11 72.0 86 38.4
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.7e-10 70.9 166 31.3
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.7e-10 70.9 88 34.1
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 2.2e-10 70.5 84 39.3
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 3.8e-10 69.7 119 31.1
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 3.8e-10 69.7 86 36.0
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.0e-10 69.3 83 33.7
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 6.5e-10 68.9 101 39.6
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 1.1e-09 68.2 97 35.1
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 1.4e-09 67.8 267 26.6
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.4e-09 67.8 86 37.2
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.9e-09 67.4 78 32.1
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.9e-09 67.4 98 39.8
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.9e-09 67.4 77 37.7
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.9e-09 67.4 87 32.2
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 3.2e-09 66.6 123 28.5
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 4.2e-09 66.2 124 29.0
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 5.5e-09 65.9 92 32.6
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 9.3e-09 65.1 102 38.2
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 1.2e-08 64.7 83 36.1
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-08 64.3 105 27.6
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.6e-08 64.3 97 39.2
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 1.6e-08 64.3 104 33.7
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 2.7e-08 63.5 90 28.9
Actinidia35403 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.6e-08 63.2 139 35.3
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.6e-08 63.2 130 30.8
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 4.6e-08 62.8 89 34.8
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 6.1e-08 62.4 97 38.1
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 6.1e-08 62.4 97 38.1
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.0e-07 61.6 78 33.3
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.3e-07 61.2 97 37.1
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.8e-07 60.8 55 49.1
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 1.8e-07 60.8 83 34.9
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.3e-07 60.5 178 22.5
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 3.9e-07 59.7 158 25.9
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.1e-06 58.2 148 27.7
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 1.5e-06 57.8 67 37.3
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.5e-06 57.8 65 38.5
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 1.9e-06 57.4 90 37.8
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 2.5e-06 57.0 98 33.7
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.3e-06 56.6 86 32.6
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 3.3e-06 56.6 81 33.3
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 3.3e-06 56.6 99 33.3
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 3.3e-06 56.6 99 33.3
Haze_09834 Corylus avellana HOM05D014719 ORTHO05D003355 4.3e-06 56.2 210 29.5
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 5.7e-06 55.8 99 33.3
unitig_899.g14722 Utricularia gibba HOM05D012928 ORTHO05D003355 9.7e-06 55.1 69 31.9


User provided reference genes

Program Settings