Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 2.3e-49 199.1 145 100.0
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 4.9e-36 154.8 147 73.5
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 1.9e-35 152.9 146 74.7
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 4.2e-35 151.8 149 82.6
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 2.1e-34 149.4 148 73.6
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 4.6e-34 148.3 147 71.4
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 2.8e-31 139.0 147 69.4
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 8.1e-31 137.5 107 91.6
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 1.9e-27 126.3 100 86.0
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 7.1e-27 124.4 145 75.2
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 3.5e-26 122.1 106 87.7
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 2.5e-24 115.9 103 86.4
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.5e-24 115.9 103 86.4
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.5e-24 115.9 103 86.4
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.5e-24 115.9 103 86.4
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.5e-24 115.9 103 86.4
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.5e-24 115.9 103 86.4
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 4.3e-24 115.2 103 86.4
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 9.6e-24 114.0 62 82.3
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 1.6e-23 113.2 119 50.4
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 8.2e-23 110.9 61 80.3
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 2.4e-22 109.4 61 80.3
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.1e-22 109.0 111 70.3
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 6.9e-22 107.8 106 80.2
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 6.9e-22 107.8 107 82.2
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 9.0e-22 107.5 123 49.6
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 9.0e-22 107.5 123 49.6
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 1.5e-21 106.7 123 66.7
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 3.4e-21 105.5 104 78.8
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 4.5e-21 105.1 61 73.8
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 7.6e-21 104.4 106 78.3
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 1.0e-20 104.0 116 75.0
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 1.7e-20 103.2 128 46.1
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.7e-20 103.2 107 70.1
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 2.9e-20 102.4 111 75.7
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 2.9e-20 102.4 124 67.7
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.8e-20 102.1 63 71.4
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 3.8e-20 102.1 63 71.4
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 4.9e-20 101.7 66 74.2
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 4.9e-20 101.7 63 71.4
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 8.4e-20 100.9 61 72.1
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 8.4e-20 100.9 103 74.8
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 1.1e-19 100.5 63 73.0
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 1.1e-19 100.5 69 72.5
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 1.1e-19 100.5 102 71.6
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.9e-19 99.8 62 67.7
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 2.5e-19 99.4 61 73.8
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 3.2e-19 99.0 64 71.9
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 4.2e-19 98.6 63 71.4
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 7.1e-19 97.8 64 73.4
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 7.1e-19 97.8 61 70.5
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 9.3e-19 97.4 63 66.7
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 9.3e-19 97.4 122 64.8
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 1.2e-18 97.1 66 69.7
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.6e-18 96.7 111 70.3
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 1.6e-18 96.7 111 70.3
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 1.6e-18 96.7 63 73.0
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 1.0e-17 94.0 103 72.8
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 1.3e-17 93.6 110 49.1
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 1.3e-17 93.6 63 68.3
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 1.3e-17 93.6 103 73.8
Haze_09713 Corylus avellana HOM05D004357 ORTHO05D005064 2.3e-17 92.8 160 53.1
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 3.0e-17 92.4 71 62.0
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 3.9e-17 92.0 100 76.0
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 3.9e-17 92.0 61 68.9
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 6.7e-17 91.3 117 42.7
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 6.7e-17 91.3 107 70.1
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 6.7e-17 91.3 64 64.1
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.9e-16 89.7 107 67.3
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.9e-16 89.7 107 67.3
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.9e-16 89.7 101 74.3
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 2.5e-16 89.4 61 65.6
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 3.3e-16 89.0 118 65.3
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 7.4e-16 87.8 107 70.1
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 7.4e-16 87.8 61 65.6
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 7.4e-16 87.8 63 65.1
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 7.4e-16 87.8 76 59.2
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 2.2e-15 86.3 75 54.7
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.8e-15 85.9 105 65.7
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 3.7e-15 85.5 64 65.6
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 3.7e-15 85.5 108 62.0
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 4.8e-15 85.1 61 63.9
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 4.8e-15 85.1 60 66.7
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 6.3e-15 84.7 71 62.0
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 6.3e-15 84.7 80 52.5
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 8.2e-15 84.3 67 59.7
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 1.4e-14 83.6 73 63.0
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 1.4e-14 83.6 73 61.6
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.4e-14 83.6 110 50.0
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.8e-14 83.2 83 55.4
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 2.4e-14 82.8 73 61.6
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.4e-14 82.8 87 57.5
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 3.1e-14 82.4 80 55.0
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 3.1e-14 82.4 57 64.9
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 4.1e-14 82.0 73 61.6
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 4.1e-14 82.0 77 54.5
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 4.1e-14 82.0 72 58.3
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 5.3e-14 81.6 83 53.0
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 5.3e-14 81.6 119 62.2
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 5.3e-14 81.6 77 54.5
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 5.3e-14 81.6 71 63.4
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 6.9e-14 81.3 73 61.6
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 6.9e-14 81.3 118 61.9
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 9.0e-14 80.9 73 60.3
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 9.0e-14 80.9 73 60.3
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 9.0e-14 80.9 73 60.3
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 9.0e-14 80.9 73 60.3
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 9.0e-14 80.9 73 60.3
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 9.0e-14 80.9 72 56.9
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.2e-13 80.5 73 60.3
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 1.5e-13 80.1 73 60.3
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 1.5e-13 80.1 81 54.3
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 1.5e-13 80.1 73 60.3
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 1.5e-13 80.1 81 54.3
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 1.5e-13 80.1 73 60.3
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 1.5e-13 80.1 81 54.3
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 2.0e-13 79.7 71 53.5
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.0e-13 79.7 68 61.8
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 2.0e-13 79.7 77 51.9
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.0e-13 79.7 68 57.4
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 2.6e-13 79.3 82 50.0
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 2.6e-13 79.3 125 65.6
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 2.6e-13 79.3 63 58.7
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 3.4e-13 79.0 73 58.9
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 4.5e-13 78.6 110 51.8
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 4.5e-13 78.6 110 51.8
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.5e-13 78.6 71 53.5
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 5.9e-13 78.2 68 55.9
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 5.9e-13 78.2 68 57.4
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 5.9e-13 78.2 87 54.0
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 7.7e-13 77.8 88 48.9
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 7.7e-13 77.8 68 57.4
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 1.0e-12 77.4 87 54.0
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.0e-12 77.4 71 53.5
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.0e-12 77.4 68 55.9
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 1.0e-12 77.4 70 55.7
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.3e-12 77.0 68 55.9
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 1.3e-12 77.0 101 67.3
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 2.2e-12 76.3 71 52.1
Peaxi162Scf01626g00015 Petunia axillaris HOM05D004357 ORTHO05D005064 2.9e-12 75.9 45 77.8
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 3.8e-12 75.5 125 60.0
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 5.0e-12 75.1 68 57.4
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 6.5e-12 74.7 161 54.7
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-11 73.9 68 52.9
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.1e-11 73.9 86 47.7
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 5.5e-11 71.6 107 65.4
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 7.2e-11 71.2 64 53.1
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 9.4e-11 70.9 55 56.4
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 9.4e-11 70.9 69 53.6
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 1.2e-10 70.5 70 55.7
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 1.4e-09 67.0 69 49.3
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 1.4e-09 67.0 123 44.7
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 1.4e-09 67.0 69 49.3
Migut.J01605 Erythranthe guttata HOM05D004357 ORTHO05D005064 3.9e-09 65.5 110 61.8
Gohir.D05G372800 Gossypium hirsutum HOM05D004357 ORTHO05D005064 2.0e-08 63.2 58 58.6
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.0e-08 63.2 73 47.9
Gorai.009G441300 Gossypium raimondii HOM05D004357 ORTHO05D005064 3.3e-08 62.4 58 58.6
ATR0585G040 Amborella trichopoda HOM05D002014 ORTHO05D001958 1.3e-07 60.5 98 64.3
SGA_v2.0_scaffold66G22369 Striga asiatica HOM05D004357 ORTHO05D005064 6.3e-07 58.2 60 43.3
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-06 57.4 123 58.5
Thecc.06G225200 Theobroma cacao HOM05D002014 ORTHO05D001958 1.1e-06 57.4 79 38.0
BolC3t14084H Brassica oleracea HOM05D004357 ORTHO05D005064 1.4e-06 57.0 66 51.5
Gohir.A04G013400 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.8e-06 56.6 57 56.1
Psat1g178720 Pisum sativum HOM05D002014 ORTHO05D001958 1.8e-06 56.6 98 60.2
arahy.Tifrunner.gnm1.ann1.HIXG1Y Arachis hypogaea HOM05D002014 ORTHO05D001958 2.4e-06 56.2 109 32.1
Duzib235G1176 Durio zibethinus HOM05D002014 ORTHO05D001958 2.4e-06 56.2 57 45.6
CANSAT56G2270 Cannabis sativa HOM05D002014 ORTHO05D001958 3.1e-06 55.8 58 46.6
Duzib235G0981 Durio zibethinus HOM05D002014 ORTHO05D001958 3.1e-06 55.8 57 45.6
arahy.Tifrunner.gnm1.ann1.DG0M13 Arachis hypogaea HOM05D002014 ORTHO05D001958 5.3e-06 55.1 107 33.6
FvH4_3g18030 Fragaria vesca HOM05D002014 ORTHO05D001958 5.3e-06 55.1 59 40.7
arahy.Tifrunner.gnm1.ann1.DPYD9S Arachis hypogaea HOM05D002014 ORTHO05D001958 6.9e-06 54.7 107 31.8


User provided reference genes

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