Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0333821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-83 312.4 155 100.0
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-74 282.0 154 91.6
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-65 253.4 154 85.1
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-65 253.4 154 85.1
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 1.5e-62 243.0 161 77.6
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 9.5e-62 240.4 154 79.9
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 2.3e-60 235.7 161 76.4
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 2.3e-60 235.7 161 76.4
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-59 233.0 161 76.4
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 3.4e-59 231.9 163 74.8
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 3.4e-59 231.9 163 74.8
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.4e-59 231.5 160 75.6
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 5.8e-59 231.1 177 71.2
Lsat_1_v5_gn_9_85820 Lactuca sativa HOM05D000445 ORTHO05D000314 1.3e-58 229.9 148 81.1
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.3e-58 229.9 161 75.2
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.7e-58 229.6 158 75.9
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.1e-57 226.9 161 75.2
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 1.1e-57 226.9 163 74.2
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 1.1e-57 226.9 161 75.2
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 1.4e-57 226.5 168 71.4
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 1.4e-57 226.5 168 71.4
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 4.1e-57 224.9 154 77.3
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 4.1e-57 224.9 154 77.3
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.1e-57 224.9 161 74.5
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 1.6e-56 223.0 163 73.0
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 1.6e-56 223.0 163 73.0
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 2.7e-56 222.2 154 74.7
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 4.6e-56 221.5 169 69.2
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 4.6e-56 221.5 161 73.3
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-55 219.9 161 72.7
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-55 219.9 161 72.7
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-55 219.9 161 72.7
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-55 219.9 161 72.7
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-55 219.9 161 72.7
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-55 219.9 161 72.7
Nn3g16494 Nelumbo nucifera HOM05D000445 ORTHO05D000314 6.6e-55 217.6 161 72.7
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 5.6e-54 214.5 163 71.8
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 7.3e-54 214.2 161 70.8
BolSC29t60563H Brassica oleracea HOM05D000445 ORTHO05D000314 7.3e-54 214.2 161 70.8
BolSC49t61211H Brassica oleracea HOM05D000445 ORTHO05D000314 7.3e-54 214.2 161 70.8
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 7.3e-54 214.2 161 70.8
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 7.3e-54 214.2 161 70.8
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 7.3e-54 214.2 161 70.8
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 3.6e-53 211.8 162 71.6
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 6.8e-52 207.6 169 67.5
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 6.8e-52 207.6 169 67.5
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 6.8e-52 207.6 169 67.5
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 6.8e-52 207.6 162 68.5
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 6.8e-52 207.6 162 68.5
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 2.6e-51 205.7 161 68.3
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 2.6e-51 205.7 161 68.3
Solyc09g031820.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.4e-51 205.3 161 67.7
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.6e-51 204.1 149 71.8
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.6e-51 204.1 149 71.8
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.6e-51 204.1 149 71.8
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.6e-51 204.1 149 71.8
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.6e-51 204.1 149 71.8
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.3e-50 203.4 169 66.3
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 1.7e-50 203.0 163 68.1
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 3.8e-50 201.8 162 67.9
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-49 200.3 154 69.5
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 3.2e-49 198.7 173 63.6
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.2e-49 198.7 159 66.7
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 9.2e-49 197.2 154 66.9
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 1.6e-48 196.4 153 68.6
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 2.1e-48 196.1 161 67.1
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 6.0e-48 194.5 162 67.3
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 1.0e-47 193.7 130 76.9
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 2.3e-47 192.6 162 66.7
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.0e-47 192.2 151 66.9
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 1.1e-46 190.3 130 75.4
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-43 179.9 154 64.9
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-43 179.9 154 64.9
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 2.0e-43 179.5 111 79.3
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 3.4e-43 178.7 154 62.3
Oeu061855.1 Olea europaea HOM05D000445 ORTHO05D000314 5.8e-43 177.9 123 77.2
BolSC29t60535H Brassica oleracea HOM05D000445 ORTHO05D000314 1.3e-42 176.8 145 65.5
CAN.G210.9 Capsicum annuum HOM05D000445 ORTHO05D000314 1.3e-42 176.8 117 76.1
HanXRQChr00c0126g0571771 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-42 175.6 128 73.4
Nitab4.5_0023562g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.9e-42 175.6 134 70.9
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 2.9e-42 175.6 166 60.8
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 2.9e-42 175.6 166 60.8
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 1.9e-41 172.9 103 83.5
BraSC143t45672Z Brassica rapa HOM05D000445 ORTHO05D000314 1.6e-40 169.9 141 64.5
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 3.0e-39 165.6 161 60.2
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.0e-39 165.6 184 55.4
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.0e-39 165.6 184 55.4
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.0e-39 165.6 184 55.4
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.0e-39 165.6 184 55.4
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.0e-39 165.6 184 55.4
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.0e-39 165.6 184 55.4
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.0e-39 165.6 184 55.4
BcaB02g11358 Brassica carinata HOM05D000445 ORTHO05D000314 6.6e-39 164.5 116 70.7
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-38 163.3 162 58.0
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 3.3e-38 162.2 112 75.9
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 4.3e-38 161.8 155 58.7
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 5.6e-38 161.4 95 86.3
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 2.1e-37 159.5 181 52.5
Nitab4.5_0001761g0240 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.9e-36 154.5 112 75.0
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 9.0e-36 154.1 112 68.8
HanXRQChr00c0788g0577401 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-35 153.3 97 79.4
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 1.5e-35 153.3 97 82.5
Oeu015121.1 Olea europaea HOM05D000445 ORTHO05D000314 2.0e-35 152.9 132 65.2
HanXRQChr00c0368g0574221 Helianthus annuus HOM05D000445 ORTHO05D000314 9.9e-35 150.6 73 98.6
AL1G45010 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.3e-34 150.2 108 69.4
Oeu012799.1 Olea europaea HOM05D000445 ORTHO05D000314 1.3e-34 150.2 111 69.4
BolSC47t61072H Brassica oleracea HOM05D000445 ORTHO05D000314 1.7e-34 149.8 160 58.1
C09p24760 Brassica napus HOM05D000445 ORTHO05D000314 2.2e-34 149.4 109 67.9
HanXRQChr00c0585g0576251 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-34 149.1 73 97.3
Nitab4.5_0022403g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-33 146.7 102 76.5
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 1.9e-33 146.4 152 53.3
Nitab4.5_0004573g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.8e-31 139.8 130 62.3
Hund11510 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.5e-30 136.7 124 62.1
Hund01216 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.9e-30 136.3 103 69.9
Hund26851 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.9e-30 136.3 103 69.9
Hund27472 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.9e-30 136.3 156 52.6
Hund19325 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.5e-30 136.0 102 70.6
Hund26897 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.5e-30 136.0 102 70.6
Hund29661 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.5e-30 136.0 102 70.6
Hund29851 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.5e-30 136.0 102 70.6
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.3e-30 135.2 140 52.9
Actinidia34809 Actinidia chinensis HOM05D000445 ORTHO05D000314 9.6e-30 134.0 112 67.0
Medtr2g019700 Medicago truncatula HOM05D000445 ORTHO05D000314 9.6e-30 134.0 147 50.3
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.3e-29 133.7 160 51.9
HanXRQChr00c0448g0574791 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-29 133.7 66 93.9
HanXRQChr00c0533g0575561 Helianthus annuus HOM05D000445 ORTHO05D000314 5.3e-28 128.3 83 79.5
Gorai.011G122200 Gossypium raimondii HOM05D000445 ORTHO05D000314 9.0e-28 127.5 89 76.4
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-27 126.3 75 85.3
Medtr1g102200 Medicago truncatula HOM05D000445 ORTHO05D000314 2.6e-27 125.9 117 58.1
Solyc00g500149.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.8e-27 124.8 93 71.0
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 1.0e-26 124.0 104 63.5
Solyc04g050850.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.2e-26 122.9 109 60.6
HanXRQChr10g0317971 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-26 122.1 57 98.2
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-25 117.9 59 96.6
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-25 117.9 59 96.6
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 4.6e-24 115.2 124 54.0
CAN.G1298.13 Capsicum annuum HOM05D000445 ORTHO05D000314 5.1e-23 111.7 78 71.8
Nitab4.5_0007104g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.9e-22 109.8 78 69.2
Hund11176 Selenicereus undatus HOM05D000445 ORTHO05D000314 6.9e-20 101.3 94 63.8
Solyc06g051370.1 Solanum lycopersicum HOM05D000445 ORTHO05D017746 1.5e-19 100.1 65 75.4
Nitab4.5_0003101g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.6e-19 99.4 154 42.9
Nn029s41592 Nelumbo nucifera HOM05D000445 ORTHO05D000314 5.8e-19 98.2 80 66.2
Carub.0026s0005 Capsella rubella HOM05D000445 ORTHO05D000314 5.5e-17 91.7 64 75.0
BolSC29t60617H Brassica oleracea HOM05D000445 ORTHO05D000314 9.3e-17 90.9 53 84.9
Solyc03g120370.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.9e-16 87.8 63 71.4
Solyc02g011940.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-15 87.0 67 64.2
HanXRQChr11g0336111 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-15 86.7 53 81.1
HanXRQChr11g0336131 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-15 86.7 53 81.1
TPR.G25324 Trifolium pratense HOM05D000445 ORTHO05D015071 1.9e-14 83.2 86 53.5
Migut.O00730 Erythranthe guttata HOM05D000445 ORTHO05D000314 4.3e-14 82.0 61 68.9
Nitab4.5_0007979g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.3e-14 82.0 71 63.4
Nitab4.5_0014666g0060 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.7e-13 79.0 66 68.2
Migut.K01186 Erythranthe guttata HOM05D000445 ORTHO05D000314 4.1e-12 75.5 66 60.6
arahy.Tifrunner.gnm1.ann1.FTZ997 Arachis hypogaea HOM05D000445 ORTHO05D000314 5.3e-12 75.1 66 59.1
Nitab4.5_0002616g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.6e-11 72.8 38 89.5
Nitab4.5_0000011g0360 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.9e-10 69.3 41 78.0
Hund27647 Selenicereus undatus HOM05D000445 ORTHO05D000314 8.5e-10 67.8 97 45.4
Hund29199 Selenicereus undatus HOM05D000445 ORTHO05D000314 8.5e-10 67.8 44 77.3
Hund29990 Selenicereus undatus HOM05D000445 ORTHO05D000314 8.5e-10 67.8 44 77.3
Hund29397 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-09 67.4 103 42.7
EL10Ac9g20995 Beta vulgaris HOM05D000445 ORTHO05D000314 7.2e-09 64.7 41 75.6
Nitab4.5_0007959g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-07 60.5 42 66.7
Nn020s41481 Nelumbo nucifera HOM05D000445 ORTHO05D000314 5.1e-07 58.5 31 87.1
Nitab4.5_0000011g0350 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.1e-07 58.5 57 59.6
Hund25565 Selenicereus undatus HOM05D000445 ORTHO05D000314 8.8e-07 57.8 44 63.6
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.3e-06 55.5 95 36.8
Lalb_Chr12g0206591 Lupinus albus HOM05D000445 ORTHO05D000314 9.7e-06 54.3 55 58.2


User provided reference genes

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