Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0333811 Helianthus annuus HOM05D000445 ORTHO05D000314 3.2e-83 311.6 149 100.0
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr00c0585g0576241 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-54 216.5 130 82.3
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 7.0e-54 214.2 130 81.5
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 7.0e-54 214.2 130 81.5
Lsat_1_v5_gn_9_18701 Lactuca sativa HOM05D000445 ORTHO05D000314 7.0e-54 214.2 130 81.5
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 1.1e-46 190.3 130 74.6
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 3.2e-46 188.7 127 75.6
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 3.2e-46 188.7 127 75.6
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 7.0e-46 187.6 130 73.8
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 2.3e-44 182.6 129 72.1
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 3.0e-44 182.2 124 75.0
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 5.0e-44 181.4 137 68.6
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.5e-43 179.9 129 72.1
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.5e-43 179.9 129 72.1
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 3.3e-43 178.7 137 67.9
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 3.3e-43 178.7 137 67.9
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.2e-42 176.8 139 68.3
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-42 175.6 130 71.5
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 3.6e-42 175.3 122 73.8
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 8.1e-42 174.1 140 67.1
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 2.3e-41 172.6 129 69.8
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 2.3e-41 172.6 129 69.8
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 4.0e-41 171.8 130 70.0
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 4.0e-41 171.8 130 70.0
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 3.4e-40 168.7 137 65.7
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 4.4e-40 168.3 128 68.8
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 9.9e-40 167.2 132 68.2
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 9.9e-40 167.2 137 65.0
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 9.9e-40 167.2 137 65.0
Lsat_1_v5_gn_3_105620 Lactuca sativa HOM05D000445 ORTHO05D000314 1.7e-39 166.4 108 77.8
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 2.2e-39 166.0 124 69.4
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 2.2e-39 166.0 137 65.0
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 2.9e-39 165.6 128 68.0
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 2.9e-39 165.6 128 68.0
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 6.4e-39 164.5 140 62.1
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 6.4e-39 164.5 140 62.1
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 6.4e-39 164.5 140 62.1
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 1.1e-38 163.7 139 63.3
BolSC49t61128H Brassica oleracea HOM05D000445 ORTHO05D000314 1.1e-38 163.7 139 63.3
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 1.1e-38 163.7 139 63.3
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 1.1e-38 163.7 139 63.3
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 1.1e-38 163.7 139 63.3
BraSC179t45786Z Brassica rapa HOM05D000445 ORTHO05D000314 1.1e-38 163.7 139 63.3
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 1.1e-38 163.7 139 63.3
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 1.4e-38 163.3 139 62.6
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 1.9e-38 162.9 130 65.4
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 2.4e-38 162.5 157 59.2
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 4.1e-38 161.8 129 65.1
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.1e-38 161.0 124 67.7
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.1e-38 161.0 124 67.7
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.1e-38 161.0 124 67.7
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.1e-38 161.0 124 67.7
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.1e-38 161.0 124 67.7
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 7.1e-38 161.0 131 64.9
HanXRQChr11g0326541 Helianthus annuus HOM05D000445 ORTHO05D000314 9.2e-38 160.6 130 63.1
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 1.6e-37 159.8 130 66.9
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.6e-37 159.8 137 62.0
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 1.3e-36 156.8 137 62.0
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 1.3e-36 156.8 137 62.0
HanXRQChr00c0533g0575561 Helianthus annuus HOM05D000445 ORTHO05D000314 6.6e-36 154.5 99 76.8
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 6.6e-36 154.5 124 66.9
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 6.6e-36 154.5 124 66.9
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 6.6e-36 154.5 124 66.9
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 6.6e-36 154.5 124 66.9
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 6.6e-36 154.5 124 66.9
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 6.6e-36 154.5 124 66.9
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 8.6e-36 154.1 137 61.3
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 2.5e-35 152.5 121 65.3
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.1e-34 149.4 150 56.0
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.4e-33 146.7 130 60.0
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-32 142.5 121 62.8
Oeu012817.1 Olea europaea HOM05D000445 ORTHO05D000314 3.8e-31 138.7 121 60.3
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 1.4e-30 136.7 134 58.2
Oeu062827.1 Olea europaea HOM05D000445 ORTHO05D000314 1.9e-30 136.3 164 51.2
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 2.1e-29 132.9 113 63.7
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.3e-28 130.2 124 60.5
Nitab4.5_0001761g0270 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.3e-28 129.4 121 57.9
Gorai.011G122200 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.0e-28 129.0 117 58.1
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.1e-25 120.6 141 46.8
BolSC37t60781H Brassica oleracea HOM05D000445 ORTHO05D000314 1.4e-25 120.2 145 49.7
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 5.2e-25 118.2 111 57.7
RcHm_v2.0_Chr2g0118441 Rosa chinensis HOM05D000445 ORTHO05D000314 5.2e-25 118.2 98 63.3
arahy.Tifrunner.gnm1.ann1.R6YYA0 Arachis hypogaea HOM05D000445 ORTHO05D000314 1.5e-24 116.7 129 51.9
Nitab4.5_0023562g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.6e-24 115.9 87 70.1
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 5.8e-24 114.8 120 55.0
Gohir.A12G048150 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.9e-23 111.7 58 86.2
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 8.4e-23 110.9 121 52.9
EL10Ac1g00652 Beta vulgaris HOM05D000445 ORTHO05D000314 1.1e-22 110.5 104 57.7
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.4e-22 108.2 150 46.0
Nitab4.5_0022403g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.6e-21 106.7 149 46.3
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 2.7e-21 105.9 58 86.2
Phvul.009G021966 Phaseolus vulgaris HOM05D000445 ORTHO05D000314 3.5e-21 105.5 58 82.8
Oeu062847.1 Olea europaea HOM05D000445 ORTHO05D000314 1.3e-20 103.6 102 57.8
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-20 103.6 91 63.7
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-20 103.6 91 63.7
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-20 103.6 91 63.7
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-20 103.6 91 63.7
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-20 103.6 91 63.7
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-20 103.6 91 63.7
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 1.7e-20 103.2 53 84.9
Nitab4.5_0014666g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.0e-20 102.4 58 82.8
Nitab4.5_0004573g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.1e-20 101.7 121 47.9
TPR.G25940 Trifolium pratense HOM05D000445 ORTHO05D000314 6.6e-20 101.3 119 50.4
Eucgr.G01321 Eucalyptus grandis HOM05D000445 ORTHO05D000314 4.3e-19 98.6 99 55.6
Nitab4.5_0002616g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.6e-19 98.2 58 75.9
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 3.6e-18 95.5 96 51.0
Gorai.009G069400 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.4e-17 93.6 58 74.1
Solyc09g031830.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-17 93.6 58 77.6
Nitab4.5_0014666g0060 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.1e-17 92.4 52 80.8
Oeu022561.1 Olea europaea HOM05D000445 ORTHO05D000314 3.1e-17 92.4 55 78.2
Nitab4.5_0027450g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.0e-16 89.7 116 50.0
Nitab4.5_0004376g0140 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.6e-16 87.8 54 72.2
Nn020s41480 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.2e-15 86.3 70 65.7
Nitab4.5_0004376g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.2e-15 86.3 59 74.6
Lalb_Chr25g0281941 Lupinus albus HOM05D000445 ORTHO05D000314 1.2e-13 80.5 58 69.0
Gorai.011G141200 Gossypium raimondii HOM05D000445 ORTHO05D000314 6.0e-13 78.2 76 60.5
Nitab4.5_0003415g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.9e-13 77.8 43 81.4
FAN08G3077 Fragaria x ananassa HOM05D000445 ORTHO05D000314 1.0e-12 77.4 65 63.1
Nitab4.5_0020349g0060 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.9e-12 75.5 100 54.0
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.5e-11 72.8 88 47.7
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.3e-11 72.4 40 82.5
Gorai.007G214200 Gossypium raimondii HOM05D000445 ORTHO05D000314 7.4e-11 71.2 49 73.5
GSVIVG01011431001 Vitis vinifera HOM05D000445 ORTHO05D000314 2.1e-10 69.7 45 75.6
Lalb_Chr20g0115671 Lupinus albus HOM05D000445 ORTHO05D000314 1.2e-08 63.9 42 71.4
Oeu015121.1 Olea europaea HOM05D000445 ORTHO05D000314 1.5e-08 63.5 103 37.9
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-08 63.2 121 35.5
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-08 63.2 121 35.5
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-08 63.2 121 35.5
Solyc00g500148.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-08 63.2 85 50.6
Nitab4.5_0003415g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.6e-08 61.2 34 82.4
Lsat_1_v5_gn_7_82600 Lactuca sativa HOM05D000445 ORTHO05D000314 6.4e-07 58.2 63 52.4
Gorai.009G328900 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.9e-06 56.6 80 47.5
Medtr3g450940 Medicago truncatula HOM05D000445 ORTHO05D000314 1.9e-06 56.6 52 59.6
Solyc10g018980.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.9e-06 56.6 67 50.7
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.2e-06 55.8 29 86.2
Solyc06g074590.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.2e-06 55.8 29 89.7
Medtr2g019700 Medicago truncatula HOM05D000445 ORTHO05D000314 4.2e-06 55.5 38 65.8
Medtr5g010700 Medicago truncatula HOM05D000445 ORTHO05D000314 4.2e-06 55.5 38 65.8
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 5.5e-06 55.1 52 57.7
Medtr8g024820 Medicago truncatula HOM05D000445 ORTHO05D000314 5.5e-06 55.1 52 57.7


User provided reference genes

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