Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 5.6e-265 917.1 494 100.0
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 5.3e-183 644.8 435 78.6
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 8.0e-155 551.2 410 75.1
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 4.6e-142 508.8 345 73.6
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.3e-141 507.3 362 72.1
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.3e-141 507.3 362 72.1
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.7e-141 506.9 396 67.7
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 3.0e-141 506.1 368 70.4
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.6e-141 505.0 395 66.6
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.4e-138 497.3 407 64.6
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.4e-138 497.3 338 73.7
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.4e-138 497.3 359 72.1
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 2.4e-138 496.5 353 72.5
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 3.1e-138 496.1 372 68.3
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 5.2e-138 495.4 339 74.0
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 6.8e-138 495.0 359 71.0
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.9e-138 494.6 375 68.5
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 8.9e-138 494.6 397 66.5
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.5e-137 493.8 345 71.3
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 2.6e-137 493.0 358 70.1
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 5.8e-137 491.9 343 72.6
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 9.9e-137 491.1 343 72.0
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.7e-136 490.3 361 68.1
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 2.9e-136 489.6 390 67.2
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 3.8e-136 489.2 365 68.2
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 3.8e-136 489.2 349 69.6
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 4.9e-136 488.8 362 69.1
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 4.9e-136 488.8 398 64.8
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 6.4e-136 488.4 359 69.4
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.1e-135 487.6 339 72.3
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 1.4e-135 487.3 373 67.0
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.4e-135 487.3 338 71.9
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.9e-135 486.9 394 66.0
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 2.4e-135 486.5 338 72.2
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.2e-135 486.1 340 72.4
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 4.1e-135 485.7 347 70.3
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 7.1e-135 485.0 343 70.3
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 7.1e-135 485.0 337 71.8
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 9.2e-135 484.6 367 67.3
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 9.2e-135 484.6 353 70.3
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.2e-134 484.2 356 71.1
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 1.2e-134 484.2 346 70.8
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 1.2e-134 484.2 341 71.3
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 3.5e-134 482.6 403 63.8
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.5e-134 482.6 361 69.3
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 6.0e-134 481.9 357 68.3
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.0e-133 481.1 369 66.9
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.0e-133 481.1 366 67.2
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.3e-133 480.7 405 61.5
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.3e-133 480.7 369 66.9
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.7e-133 480.3 382 65.7
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 3.9e-133 479.2 340 70.6
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 6.6e-133 478.4 372 65.9
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 6.6e-133 478.4 362 68.0
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.1e-132 477.6 344 69.5
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 4.3e-132 475.7 342 68.4
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 9.6e-132 474.6 399 62.7
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 2.1e-131 473.4 342 69.9
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 2.8e-131 473.0 277 83.8
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 2.4e-130 469.9 370 65.9
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 2.6e-129 466.5 342 67.8
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.4e-127 460.7 382 61.5
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 4.2e-127 459.1 342 67.0
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 5.1e-125 452.2 351 63.0
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 6.6e-125 451.8 370 63.2
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 1.9e-124 450.3 411 56.4
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 3.3e-124 449.5 341 66.3
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 7.3e-124 448.4 360 62.5
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 1.3e-123 447.6 365 61.9
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.6e-123 447.2 362 64.9
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 2.8e-123 446.4 362 61.9
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 4.8e-123 445.7 373 61.4
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 6.2e-123 445.3 362 62.4
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.1e-122 444.5 340 64.7
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 1.4e-122 444.1 359 61.6
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 1.8e-122 443.7 361 61.2
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.0e-122 442.6 360 63.1
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.3e-122 442.2 373 60.1
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 5.3e-122 442.2 348 64.7
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 1.2e-121 441.0 459 54.5
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 1.2e-121 441.0 338 66.9
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 3.4e-121 439.5 390 61.5
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 2.2e-120 436.8 343 63.3
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 1.4e-119 434.1 340 62.9
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.4e-119 434.1 338 63.6
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 1.4e-119 434.1 340 62.9
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.4e-119 434.1 338 63.6
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 7.1e-119 431.8 344 61.6
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 2.7e-118 429.9 340 61.8
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 5.1e-117 425.6 465 51.4
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 2.5e-116 423.3 343 64.1
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 3.3e-116 422.9 373 59.2
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 6.2e-115 418.7 338 61.8
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 3.1e-114 416.4 369 60.2
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 5.8e-113 412.1 345 64.1
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 6.4e-112 408.7 340 62.6
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.9e-111 407.1 351 61.0
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.2e-111 406.4 372 58.9
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.9e-108 397.1 260 71.9
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 5.6e-108 395.6 290 71.7
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 6.2e-107 392.1 470 49.4
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.0e-104 384.8 459 46.8
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 2.2e-104 383.6 324 61.4
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 4.9e-104 382.5 214 84.1
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 2.5e-103 380.2 215 83.7
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 3.5e-102 376.3 280 67.5
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 2.3e-101 373.6 214 82.2
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.9e-100 370.5 305 62.3
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 1.4e-98 364.4 202 88.1
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 9.0e-98 361.7 275 65.8
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.6e-94 350.9 551 41.7
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 2.3e-93 347.1 253 67.2
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 3.9e-93 346.3 275 65.5
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 2.0e-92 344.0 251 67.7
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.6e-84 317.0 217 69.1
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 4.1e-82 309.7 237 70.9
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 4.5e-81 306.2 234 68.4
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.0e-80 302.8 214 68.7
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 8.5e-80 302.0 232 70.7
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-77 295.0 256 57.4
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.0e-76 290.8 336 52.7
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 3.1e-74 283.5 217 63.1
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 1.3e-59 235.0 208 63.0
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 7.0e-42 176.0 254 40.6
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.0e-40 172.2 258 36.8
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 8.1e-30 136.0 285 35.1
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 4.9e-27 126.7 252 36.5
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.1e-23 115.5 88 69.3
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.1e-22 111.3 126 51.6
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 1.7e-19 101.7 129 48.8
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 8.7e-16 89.4 246 28.9
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 1.1e-15 89.0 50 78.0
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.1e-15 89.0 50 78.0
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 1.5e-15 88.6 231 31.6
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.9e-15 88.2 50 80.0
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 5.6e-15 86.7 50 78.0
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 5.6e-15 86.7 50 78.0
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 1.3e-14 85.5 150 40.0
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.6e-14 84.0 50 72.0
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.6e-14 84.0 50 72.0
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.6e-14 84.0 50 72.0
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 4.8e-14 83.6 150 40.0
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.2e-14 83.2 168 33.3
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.1e-13 82.4 50 70.0
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 1.8e-13 81.6 49 79.6
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 2.6e-12 77.8 156 35.3
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 4.9e-11 73.6 171 31.6
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 5.4e-10 70.1 195 31.3


User provided reference genes

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