Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 2.1e-67 258.8 126 100.0
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 4.1e-63 244.6 126 93.7
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 1.0e-29 133.7 125 57.6
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 5.1e-29 131.3 126 56.3
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 2.1e-27 125.9 126 53.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.1e-26 123.6 121 56.2
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 3.1e-26 122.1 131 52.7
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 6.8e-26 120.9 125 50.4
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 6.8e-26 120.9 125 50.4
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.5e-25 119.8 125 51.2
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 1.5e-25 119.8 125 51.2
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 2.0e-25 119.4 123 51.2
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 2.6e-25 119.0 128 49.2
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.6e-25 119.0 116 51.7
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.6e-25 119.0 116 51.7
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.6e-25 119.0 116 51.7
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 3.4e-25 118.6 129 48.8
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 4.4e-25 118.2 116 52.6
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 9.9e-25 117.1 124 50.0
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 1.3e-24 116.7 116 51.7
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.3e-24 116.7 115 53.0
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.7e-24 116.3 124 49.2
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 1.7e-24 116.3 123 48.8
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.7e-24 116.3 125 48.0
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.2e-24 115.9 124 49.2
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.9e-24 115.5 124 48.4
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 3.8e-24 115.2 115 52.2
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 4.9e-24 114.8 114 51.8
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 4.9e-24 114.8 122 48.4
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 4.9e-24 114.8 112 54.5
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 6.4e-24 114.4 116 50.0
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 6.4e-24 114.4 116 50.0
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 6.4e-24 114.4 116 50.9
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 6.4e-24 114.4 125 47.2
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 8.4e-24 114.0 125 46.4
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 8.4e-24 114.0 115 52.2
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 8.4e-24 114.0 124 47.6
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 8.4e-24 114.0 124 47.6
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.1e-23 113.6 125 46.4
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 1.1e-23 113.6 125 48.0
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.1e-23 113.6 125 48.0
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.1e-23 113.6 114 51.8
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 1.1e-23 113.6 125 48.0
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.1e-23 113.6 124 47.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 1.4e-23 113.2 125 46.4
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.4e-23 113.2 125 48.0
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.4e-23 113.2 126 50.8
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 1.4e-23 113.2 115 49.6
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 1.9e-23 112.8 124 48.4
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 3.2e-23 112.1 126 46.8
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 3.2e-23 112.1 114 50.0
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 3.2e-23 112.1 123 48.8
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 4.2e-23 111.7 123 48.8
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 4.2e-23 111.7 124 47.6
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.2e-23 111.7 114 50.0
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 4.2e-23 111.7 111 50.5
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 4.2e-23 111.7 114 51.8
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 5.4e-23 111.3 124 46.8
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 5.4e-23 111.3 118 52.5
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.4e-23 111.3 114 50.0
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 5.4e-23 111.3 114 50.0
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 5.4e-23 111.3 126 46.8
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 5.4e-23 111.3 112 50.9
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 5.4e-23 111.3 125 46.4
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 7.1e-23 110.9 124 46.8
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 9.3e-23 110.5 125 46.4
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 9.3e-23 110.5 125 46.4
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 9.3e-23 110.5 124 46.8
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.2e-22 110.2 125 46.4
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 1.6e-22 109.8 124 46.0
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.6e-22 109.8 112 49.1
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.6e-22 109.8 112 49.1
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 2.1e-22 109.4 125 47.2
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 2.7e-22 109.0 125 46.4
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 2.7e-22 109.0 116 46.6
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 2.7e-22 109.0 114 48.2
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.7e-22 109.0 112 50.0
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 3.5e-22 108.6 122 46.7
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 3.5e-22 108.6 125 44.8
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 4.6e-22 108.2 125 46.4
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 4.6e-22 108.2 112 49.1
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 6.0e-22 107.8 114 50.0
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 7.8e-22 107.5 124 44.4
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 7.8e-22 107.5 124 47.6
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 7.8e-22 107.5 125 44.8
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 7.8e-22 107.5 124 47.6
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.0e-21 107.1 125 44.8
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 1.3e-21 106.7 123 44.7
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 1.7e-21 106.3 124 44.4
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.7e-21 106.3 124 44.4
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.7e-21 106.3 122 44.3
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 2.3e-21 105.9 117 48.7
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.3e-21 105.9 112 48.2
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 3.0e-21 105.5 121 45.5
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 5.1e-21 104.8 123 43.9
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.1e-20 103.6 124 42.7
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 1.5e-20 103.2 114 48.2
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 1.9e-20 102.8 124 43.5
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 3.3e-20 102.1 114 46.5
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 3.3e-20 102.1 124 46.0
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.6e-19 99.8 124 45.2
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.6e-19 99.8 126 42.1
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 2.1e-19 99.4 119 45.4
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 2.8e-19 99.0 125 42.4
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 4.8e-19 98.2 114 44.7
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 4.8e-19 98.2 121 42.1
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 6.2e-19 97.8 119 42.0
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.1e-18 97.1 114 43.9
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 1.4e-18 96.7 117 45.3
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 6.9e-18 94.4 119 43.7
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 6.9e-18 94.4 119 43.7
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 6.9e-18 94.4 114 44.7
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.2e-17 93.6 111 44.1
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 2.6e-17 92.4 116 43.1
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 4.4e-17 91.7 114 44.7
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 4.4e-17 91.7 114 44.7
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 4.4e-17 91.7 114 44.7
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 4.4e-17 91.7 114 44.7
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 4.4e-17 91.7 114 44.7
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 9.9e-17 90.5 111 44.1
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 3.8e-16 88.6 114 43.9
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 3.8e-16 88.6 114 43.9
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 6.4e-16 87.8 114 43.0
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 6.4e-16 87.8 114 43.0
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.4e-15 86.7 128 36.7
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 2.7e-14 82.4 105 45.7
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 2.1e-11 72.8 54 61.1
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.6e-09 65.9 87 40.2
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.3e-08 63.5 55 61.8
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 1.9e-07 59.7 115 31.3
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 3.2e-07 58.9 48 58.3
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 4.2e-07 58.5 46 56.5
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 5.5e-07 58.2 114 35.1
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.2e-06 57.0 48 56.2


User provided reference genes

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