Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 4.2e-49 197.6 92 100.0
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 2.5e-25 118.6 66 83.3
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 7.2e-25 117.1 66 81.8
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 3.6e-24 114.8 66 81.8
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-23 112.5 61 83.6
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-23 112.5 61 83.6
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.0e-22 109.0 66 75.8
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 3.4e-22 108.2 66 75.8
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 1.3e-21 106.3 66 74.2
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.3e-21 106.3 66 74.2
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.3e-21 106.3 66 74.2
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.3e-21 104.0 66 72.7
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 1.1e-20 103.2 66 72.7
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 1.4e-20 102.8 66 69.7
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 1.4e-20 102.8 66 71.2
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 2.4e-20 102.1 66 71.2
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 3.1e-20 101.7 66 69.7
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 3.1e-20 101.7 66 71.2
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 3.1e-20 101.7 66 71.2
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 3.1e-20 101.7 66 71.2
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 3.1e-20 101.7 66 71.2
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 3.1e-20 101.7 66 71.2
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 69.7
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.1e-20 101.3 66 71.2
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 5.4e-20 100.9 66 69.7
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.4e-20 100.9 66 69.7
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 9.1e-20 100.1 66 68.2
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 1.2e-19 99.8 66 68.2
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 1.6e-19 99.4 66 68.2
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 2.0e-19 99.0 66 66.7
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 2.0e-19 99.0 66 66.7
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 2.0e-19 99.0 66 68.2
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 2.0e-19 99.0 86 59.3
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 2.7e-19 98.6 66 66.7
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 2.7e-19 98.6 66 68.2
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 2.7e-19 98.6 66 68.2
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 2.7e-19 98.6 66 68.2
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 2.7e-19 98.6 66 68.2
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 2.7e-19 98.6 66 68.2
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 3.5e-19 98.2 66 66.7
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 3.5e-19 98.2 68 69.1
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 5.9e-19 97.4 66 68.2
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 5.9e-19 97.4 66 66.7
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 5.9e-19 97.4 64 68.8
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 2.2e-18 95.5 66 66.7
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 5.0e-18 94.4 66 66.7
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 6.5e-18 94.0 66 68.2
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 3.2e-17 91.7 61 67.2
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.6e-16 89.4 66 63.6
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.6e-16 89.4 66 63.6
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 1.6e-16 89.4 66 63.6
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 1.6e-16 89.4 66 63.6
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 2.8e-16 88.6 84 54.8
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 4.7e-16 87.8 67 62.7
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 4.7e-16 87.8 67 62.7
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 8.0e-16 87.0 66 62.1
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-15 85.9 50 82.0
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 2.3e-15 85.5 66 60.6
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 4.0e-15 84.7 46 82.6
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 5.2e-15 84.3 66 62.1
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 8.8e-15 83.6 62 61.3
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 3.4e-14 81.6 66 59.1
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 1.7e-13 79.3 54 64.8
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.7e-13 79.3 66 56.1
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 4.9e-13 77.8 66 56.1
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 6.3e-13 77.4 66 60.6
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 5.4e-12 74.3 60 55.0
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 9.2e-12 73.6 66 56.1
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.8e-10 68.2 66 54.5
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.0e-10 67.8 66 54.5
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 2.5e-09 65.5 51 62.7
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 3.3e-09 65.1 47 61.7
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.3e-09 64.7 66 53.0
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 1.6e-08 62.8 65 49.2
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 1.6e-08 62.8 72 52.8
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 2.1e-08 62.4 45 64.4


User provided reference genes

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