Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 6.0e-214 747.3 387 100.0
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 6.0e-214 747.3 387 100.0
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.1e-164 583.6 398 82.4
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 1.5e-60 237.7 410 42.7
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 6.9e-53 212.2 571 34.3
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.1e-50 204.9 561 34.0
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 9.1e-45 185.3 446 35.4
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 3.7e-38 163.3 486 33.5
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 9.1e-37 158.7 405 33.6
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 2.0e-36 157.5 447 32.2
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.6e-36 157.1 449 34.7
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 2.9e-35 153.7 412 32.8
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 5.0e-35 152.9 403 34.5
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 8.5e-35 152.1 500 31.2
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 1.9e-34 151.0 387 33.9
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.9e-34 151.0 502 32.1
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 2.5e-34 150.6 480 32.5
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.6e-33 147.9 414 31.6
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 4.7e-33 146.4 415 30.4
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.0e-32 145.2 383 35.2
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 1.8e-32 144.4 445 31.7
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 2.3e-32 144.1 445 31.0
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 2.3e-32 144.1 453 32.0
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 3.0e-32 143.7 466 30.9
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 4.0e-32 143.3 418 33.7
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 4.0e-32 143.3 381 34.9
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.5e-31 141.4 457 31.1
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.5e-31 141.4 483 31.1
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.6e-31 140.6 440 30.9
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 2.6e-31 140.6 397 31.7
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 2.6e-31 140.6 400 34.2
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 3.4e-31 140.2 421 33.3
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 4.4e-31 139.8 378 33.9
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 4.4e-31 139.8 455 31.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 4.4e-31 139.8 413 31.7
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 7.5e-31 139.0 462 29.4
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 9.7e-31 138.7 475 29.9
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 1.3e-30 138.3 424 33.3
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.7e-30 137.9 495 29.7
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.7e-30 137.9 378 33.3
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.7e-30 137.9 378 33.3
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.8e-30 137.1 416 31.7
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 3.7e-30 136.7 413 31.5
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 8.3e-30 135.6 215 41.9
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 8.3e-30 135.6 404 32.2
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.4e-29 134.8 422 32.2
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 3.1e-29 133.7 411 32.4
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 3.1e-29 133.7 493 31.6
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.1e-29 133.7 423 32.4
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.1e-29 133.7 394 29.7
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 5.3e-29 132.9 433 30.9
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.3e-29 132.9 471 31.0
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 9.1e-29 132.1 415 32.8
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.2e-28 131.7 393 30.8
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 2.7e-28 130.6 463 30.7
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 2.7e-28 130.6 422 31.8
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 3.5e-28 130.2 463 29.4
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.9e-28 129.4 453 31.3
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.7e-28 129.0 493 30.4
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 1.0e-27 128.6 443 29.3
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 1.3e-27 128.3 467 29.8
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.3e-27 128.3 406 30.3
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.7e-27 127.9 393 31.0
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.2e-27 127.5 388 32.2
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 2.9e-27 127.1 456 27.9
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 3.8e-27 126.7 120 52.5
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.8e-27 126.7 524 30.0
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 5.0e-27 126.3 430 30.7
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 5.0e-27 126.3 433 30.5
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 6.5e-27 125.9 466 28.5
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 6.5e-27 125.9 398 30.9
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.9e-26 124.4 393 30.5
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 2.5e-26 124.0 473 28.3
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 2.5e-26 124.0 469 29.9
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 2.5e-26 124.0 461 28.2
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 2.5e-26 124.0 461 28.2
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 3.2e-26 123.6 388 30.2
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 4.2e-26 123.2 348 34.2
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 9.4e-26 122.1 473 28.3
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 9.4e-26 122.1 391 28.4
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 1.2e-25 121.7 414 29.5
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.1e-25 120.9 385 31.4
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 4.7e-25 119.8 379 31.1
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 8.0e-25 119.0 440 28.2
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.4e-24 118.2 216 39.4
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.8e-24 117.9 463 27.2
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 2.3e-24 117.5 450 27.8
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 3.0e-24 117.1 457 29.1
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 3.0e-24 117.1 388 30.4
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 4.0e-24 116.7 135 47.4
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 4.0e-24 116.7 385 29.6
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 6.8e-24 115.9 379 29.3
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 6.8e-24 115.9 457 29.1
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.2e-23 115.2 140 50.0
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.6e-23 114.0 125 51.2
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 3.4e-23 113.6 385 29.4
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 4.4e-23 113.2 418 28.9
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 4.4e-23 113.2 450 28.9
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.7e-23 112.8 256 36.7
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 9.8e-23 112.1 487 25.1
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 9.8e-23 112.1 537 25.9
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 9.8e-23 112.1 217 37.8
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 9.8e-23 112.1 140 50.0
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.3e-22 111.7 414 29.2
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.3e-22 111.7 222 38.3
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.7e-22 111.3 211 38.9
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 3.7e-22 110.2 399 29.1
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 3.7e-22 110.2 236 37.3
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.4e-21 108.2 140 48.6
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.4e-21 107.5 99 57.6
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 4.1e-21 106.7 420 27.1
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 5.4e-21 106.3 272 30.9
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 5.4e-21 106.3 118 47.5
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 9.1e-21 105.5 227 33.5
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 9.1e-21 105.5 417 29.0
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 9.1e-21 105.5 385 29.9
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.2e-20 105.1 277 33.9
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.6e-20 104.8 374 29.4
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 2.7e-20 104.0 472 28.2
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 5.9e-20 102.8 278 31.7
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 5.9e-20 102.8 372 28.8
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 7.7e-20 102.4 205 37.1
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.0e-19 102.1 234 32.9
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 3.8e-19 100.1 104 50.0
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 5.0e-19 99.8 368 29.3
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 5.0e-19 99.8 154 43.5
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 4.2e-18 96.7 106 45.3
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 4.2e-18 96.7 310 31.6
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 5.5e-18 96.3 383 26.1
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.4e-16 91.7 509 24.2
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 4.0e-16 90.1 505 24.4
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 6.8e-16 89.4 364 27.5
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 2.0e-15 87.8 107 43.0
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 6.3e-14 82.8 118 39.8
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.3e-11 74.3 99 41.4
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 6.1e-09 66.2 103 38.8
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 1.8e-08 64.7 74 48.6
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 2.0e-07 61.2 167 30.5
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 2.6e-07 60.8 94 38.3
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 2.6e-07 60.8 78 47.4
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 3.4e-07 60.5 40 72.5
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.4e-07 60.5 55 54.5
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 4.4e-07 60.1 108 33.3


User provided reference genes

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