Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 0.0e+00 1161.4 582 100.0
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 3.0e-286 988.0 580 84.3
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 9.8e-285 983.0 587 84.5
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 3.7e-268 927.9 547 81.5
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.1e-267 926.4 540 82.4
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 4.1e-267 924.5 540 82.2
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 7.8e-266 920.2 540 82.0
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 1.9e-264 915.6 585 77.1
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 9.5e-264 913.3 572 78.0
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 2.8e-263 911.8 547 79.9
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 4.7e-263 911.0 572 77.6
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 6.8e-262 907.1 561 78.6
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 8.9e-262 906.7 540 80.4
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 2.9e-260 901.7 584 76.2
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 4.9e-260 901.0 551 78.4
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 1.1e-259 899.8 569 77.9
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 1.9e-259 899.0 548 79.2
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 3.2e-259 898.3 541 79.3
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 3.2e-259 898.3 549 78.1
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 3.2e-259 898.3 582 76.8
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 5.4e-259 897.5 565 77.0
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 7.0e-259 897.1 557 77.2
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 7.0e-259 897.1 565 77.0
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 2.0e-258 895.6 549 78.3
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 3.5e-258 894.8 549 78.0
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 4.6e-258 894.4 582 74.6
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 6.0e-258 894.0 565 76.8
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 7.8e-258 893.6 573 76.3
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 1.0e-257 893.3 549 79.6
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 1.7e-257 892.5 540 78.9
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 1.7e-257 892.5 540 78.7
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 2.3e-257 892.1 540 78.7
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.3e-257 892.1 565 76.6
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 3.9e-257 891.3 552 76.8
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 3.9e-257 891.3 565 75.9
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 6.6e-257 890.6 540 78.3
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 1.9e-256 889.0 541 79.9
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 2.5e-256 888.6 614 72.0
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 4.3e-256 887.9 540 78.7
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 4.3e-256 887.9 527 80.5
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 5.6e-256 887.5 578 74.2
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 9.5e-256 886.7 551 77.3
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 1.2e-255 886.3 551 77.3
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 2.8e-255 885.2 580 74.3
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 2.8e-255 885.2 540 78.3
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 3.6e-255 884.8 548 76.8
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 6.2e-255 884.0 540 78.3
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 1.1e-254 883.2 525 79.6
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 1.8e-254 882.5 521 80.6
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 1.8e-254 882.5 541 78.9
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 2.3e-254 882.1 543 78.3
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 2.3e-254 882.1 543 78.3
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 2.3e-254 882.1 582 74.1
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 6.8e-254 880.6 524 80.2
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 6.8e-254 880.6 525 79.8
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 1.5e-253 879.4 521 80.6
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 5.8e-253 877.5 521 80.6
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 5.8e-253 877.5 582 74.7
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 7.5e-253 877.1 567 75.7
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 9.8e-253 876.7 553 76.9
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 9.8e-253 876.7 521 80.2
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 9.8e-253 876.7 541 77.3
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 9.8e-253 876.7 521 80.4
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 2.2e-252 875.5 663 67.9
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.1e-251 873.2 508 82.1
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 3.2e-251 871.7 521 81.0
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 5.4e-251 870.9 574 74.6
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 9.2e-251 870.2 521 81.0
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 1.2e-250 869.8 584 72.9
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 1.2e-250 869.8 565 74.5
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 1.6e-250 869.4 551 75.7
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 2.1e-250 869.0 563 76.0
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 1.3e-249 866.3 583 74.3
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 2.3e-249 865.5 563 76.0
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 3.9e-249 864.8 541 77.8
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 6.6e-249 864.0 584 72.6
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 6.6e-249 864.0 548 75.7
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.1e-248 863.2 582 72.5
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 1.1e-248 863.2 582 73.0
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 1.5e-248 862.8 568 74.8
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 4.3e-248 861.3 548 76.8
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.2e-247 859.8 558 76.2
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 8.1e-247 857.1 564 72.5
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 2.2e-244 849.0 586 71.3
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 2.4e-243 845.5 521 78.7
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 5.4e-243 844.3 540 74.6
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.1e-242 842.4 607 69.5
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 6.0e-242 840.9 540 74.6
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 7.8e-242 840.5 540 75.4
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 2.1e-239 832.4 582 69.4
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 3.1e-238 828.6 560 72.9
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 1.2e-237 826.6 535 75.5
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 2.6e-237 825.5 540 74.8
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 1.2e-234 816.6 567 71.1
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 3.1e-230 802.0 468 80.6
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 6.9e-230 800.8 469 81.9
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 4.9e-228 794.7 552 69.2
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 1.1e-227 793.5 541 70.1
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 9.6e-224 780.4 468 78.6
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 5.3e-222 774.6 466 80.3
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 4.5e-221 771.5 545 68.1
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.3e-220 770.0 521 72.7
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 6.4e-220 767.7 439 82.9
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 7.1e-219 764.2 495 77.6
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 5.6e-216 754.6 443 81.3
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 2.3e-209 732.6 467 75.6
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.8e-206 723.0 540 66.1
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 6.7e-201 704.5 543 63.2
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 1.3e-191 673.7 549 59.9
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 7.7e-181 637.9 462 68.2
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 9.7e-176 620.9 397 75.8
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 2.5e-171 606.3 527 57.7
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 2.1e-170 603.2 565 53.5
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 6.8e-153 545.0 524 52.9
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 1.7e-151 540.4 450 58.7
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 3.0e-132 476.5 332 69.9
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.7e-119 434.1 289 75.4
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 1.5e-83 314.7 254 59.4
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 9.7e-75 285.4 158 82.9
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 5.7e-51 206.5 500 29.2
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 4.9e-42 176.8 208 49.5
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 4.9e-34 150.2 466 27.7
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 6.6e-31 139.8 126 56.3
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 2.3e-20 104.8 66 68.2
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 5.8e-19 100.1 75 68.0
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 1.2e-16 92.4 88 55.7
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 2.3e-07 61.6 370 22.7
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 6.6e-07 60.1 30 86.7
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 5.6e-06 57.0 303 24.1


User provided reference genes

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