Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 2.5e-121 438.7 214 100.0
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 2.8e-64 249.2 174 73.0
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 4.7e-43 178.7 189 51.3
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 4.9e-40 168.7 185 52.4
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.1e-39 167.5 182 52.7
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 1.8e-39 166.8 190 51.1
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 9.2e-39 164.5 175 53.1
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 2.7e-38 162.9 170 51.8
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 4.6e-38 162.2 186 51.1
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 5.9e-38 161.8 190 50.0
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 7.8e-38 161.4 191 50.3
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 1.0e-37 161.0 202 50.0
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 8.6e-37 157.9 192 48.4
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.5e-36 157.1 190 48.9
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 2.5e-36 156.4 192 48.4
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 4.3e-36 155.6 190 49.5
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 4.3e-36 155.6 190 49.5
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 4.3e-36 155.6 193 49.7
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 5.6e-36 155.2 186 50.5
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 7.3e-36 154.8 186 50.5
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 7.3e-36 154.8 190 47.9
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 9.5e-36 154.5 175 51.4
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 9.5e-36 154.5 195 46.2
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 1.2e-35 154.1 160 53.1
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 3.6e-35 152.5 186 50.0
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 6.2e-35 151.8 177 49.2
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 3.1e-34 149.4 190 50.5
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 5.2e-34 148.7 162 49.4
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 1.5e-33 147.1 185 45.9
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 2.6e-33 146.4 192 45.8
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 5.8e-33 145.2 196 45.9
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 7.5e-33 144.8 153 49.7
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 9.8e-33 144.4 187 46.5
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 2.2e-32 143.3 184 47.8
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 6.4e-32 141.7 185 47.6
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 6.4e-32 141.7 156 50.6
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 1.4e-31 140.6 194 43.8
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 2.4e-31 139.8 195 43.6
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 7.0e-31 138.3 195 46.7
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 9.2e-31 137.9 181 44.8
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 9.2e-31 137.9 182 46.7
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 4.6e-30 135.6 182 45.6
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 3.9e-29 132.5 185 47.0
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 3.9e-29 132.5 185 44.3
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 3.9e-29 132.5 207 40.1
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 6.6e-29 131.7 186 44.6
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 6.6e-29 131.7 187 43.3
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 8.6e-29 131.3 187 43.3
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 1.9e-28 130.2 210 41.4
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 3.3e-28 129.4 184 45.7
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 4.3e-28 129.0 206 39.3
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 7.3e-28 128.3 185 43.2
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 9.5e-28 127.9 182 45.1
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 1.2e-27 127.5 184 45.1
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 1.6e-27 127.1 186 45.2
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 2.1e-27 126.7 184 45.1
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 2.8e-27 126.3 185 45.4
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 2.8e-27 126.3 182 44.5
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 2.8e-27 126.3 185 45.4
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 2.8e-27 126.3 198 40.9
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 1.1e-26 124.4 176 43.8
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.1e-26 124.4 215 38.6
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 1.5e-25 120.6 180 43.9
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 2.0e-25 120.2 208 39.9
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 5.8e-25 118.6 190 40.0
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 8.3e-24 114.8 157 45.9
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 1.4e-23 114.0 181 43.6
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 2.4e-23 113.2 218 36.2
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 2.4e-23 113.2 158 41.8
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 5.4e-23 112.1 145 45.5
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 7.1e-23 111.7 185 42.7
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 2.1e-22 110.2 158 41.8
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 3.5e-22 109.4 187 41.2
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.7e-21 107.1 151 43.7
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 2.3e-21 106.7 217 35.9
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 3.0e-21 106.3 120 50.0
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 3.9e-21 105.9 155 40.0
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 8.6e-21 104.8 141 43.3
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 1.5e-20 104.0 197 40.1
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.5e-20 104.0 166 39.8
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.9e-20 103.6 165 40.0
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 2.5e-20 103.2 149 44.3
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 2.5e-20 103.2 179 40.8
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 4.3e-20 102.4 150 43.3
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 1.6e-19 100.5 159 40.9
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 2.1e-19 100.1 153 39.9
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 2.8e-19 99.8 178 38.2
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 8.9e-18 94.7 160 36.9
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 8.4e-16 88.2 148 41.2
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.2e-14 84.3 160 35.0
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 2.3e-13 80.1 175 34.9
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 5.6e-12 75.5 157 34.4
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 1.6e-11 73.9 85 45.9
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 1.4e-10 70.9 81 46.9
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 3.4e-09 66.2 60 50.0
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 1.3e-08 64.3 58 51.7
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 6.4e-08 62.0 70 48.6
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.4e-07 60.8 38 65.8
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 3.2e-07 59.7 117 34.2
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 1.2e-06 57.8 34 61.8
SEGI_16996 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 1.6e-06 57.4 104 36.5
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 6.0e-06 55.5 94 37.2


User provided reference genes

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