Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.1e-303 1045.8 538 100.0
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 3.7e-278 961.1 539 91.5
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 1.4e-272 942.6 537 90.7
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 1.4e-269 932.6 571 83.2
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 9.7e-263 909.8 538 84.0
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 1.3e-262 909.4 535 83.7
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 1.1e-261 906.4 535 82.6
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 2.0e-260 902.1 536 85.3
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 5.9e-260 900.6 536 85.8
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 5.0e-259 897.5 538 83.5
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 8.5e-259 896.7 538 83.8
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.9e-258 895.6 538 83.3
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 9.4e-258 893.3 534 85.4
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 4.7e-257 891.0 538 80.1
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 3.0e-256 888.3 538 84.0
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.1e-255 886.3 536 79.9
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.0e-255 885.6 538 84.2
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 4.4e-255 884.4 538 80.1
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 4.4e-255 884.4 538 80.7
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 7.4e-255 883.6 535 84.7
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.7e-254 882.5 556 81.3
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.8e-254 880.9 538 83.1
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 4.8e-254 880.9 538 83.1
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 8.2e-254 880.2 538 82.7
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.1e-253 879.8 536 78.7
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 1.4e-253 879.4 533 80.1
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 3.1e-253 878.2 533 79.9
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 2.0e-252 875.5 534 80.7
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 2.0e-252 875.5 536 79.1
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 3.5e-252 874.8 533 83.7
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 4.5e-252 874.4 535 83.7
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 4.5e-252 874.4 538 83.6
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 3.8e-251 871.3 538 83.1
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.9e-250 869.0 538 79.2
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 2.5e-250 868.6 536 82.6
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 2.5e-250 868.6 533 82.4
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 4.2e-250 867.8 539 82.6
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 7.2e-250 867.1 533 82.4
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.7e-249 864.4 536 79.5
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 4.7e-249 864.4 533 83.5
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 4.7e-249 864.4 533 83.1
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 1.8e-248 862.4 535 81.1
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 4.0e-248 861.3 536 78.2
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 5.2e-248 860.9 535 83.0
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.2e-247 859.8 538 78.6
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 1.5e-247 859.4 533 78.4
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 1.5e-247 859.4 533 78.4
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 1.5e-247 859.4 533 80.5
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 2.6e-247 858.6 533 82.7
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 9.7e-247 856.7 533 79.7
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 1.3e-246 856.3 533 78.2
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 1.3e-246 856.3 533 78.2
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 6.3e-246 854.0 536 81.5
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 6.3e-246 854.0 535 77.9
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 8.3e-246 853.6 594 71.7
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.1e-245 853.2 594 71.5
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 1.6e-244 849.4 533 78.4
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 2.7e-244 848.6 533 80.3
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 3.5e-244 848.2 533 80.1
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.3e-243 846.3 533 79.5
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 1.5e-242 842.8 533 79.7
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.5e-242 842.8 535 80.4
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 3.2e-242 841.6 533 80.1
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.6e-241 839.3 576 74.0
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.0e-240 836.6 532 79.7
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.4e-240 836.3 533 79.7
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 1.4e-240 836.3 533 75.8
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.4e-239 831.6 533 79.7
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 9.8e-239 830.1 535 78.7
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 1.3e-238 829.7 528 81.8
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.8e-238 828.6 533 79.5
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 4.8e-238 827.8 533 76.7
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 1.1e-237 826.6 535 75.9
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 3.1e-237 825.1 600 73.2
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.5e-234 816.2 535 79.3
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 2.6e-231 805.4 543 74.8
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 4.9e-230 801.2 534 74.3
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.2e-228 796.6 626 65.8
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 9.5e-226 786.9 550 76.5
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 6.8e-224 780.8 536 76.9
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.5e-223 779.6 538 73.4
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 3.5e-220 768.5 536 72.4
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 3.3e-218 761.9 540 71.5
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 4.9e-214 748.0 522 72.6
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 2.4e-213 745.7 530 67.9
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 7.0e-213 744.2 453 83.7
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 2.7e-212 742.3 530 69.8
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.1e-208 730.3 549 68.9
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 3.1e-208 728.8 533 70.2
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 4.9e-198 694.9 538 71.4
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 4.4e-191 671.8 753 51.1
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 2.4e-189 666.0 400 80.0
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 3.2e-189 665.6 577 59.4
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 7.8e-188 661.0 540 65.4
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 1.2e-183 647.1 376 83.2
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 3.4e-183 645.6 377 82.8
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.3e-182 643.7 535 63.2
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 1.5e-178 630.2 440 70.9
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 8.1e-177 624.4 534 56.2
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 4.2e-173 612.1 536 56.0
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 6.3e-161 571.6 361 76.2
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 5.3e-160 568.5 530 53.4
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 1.6e-148 530.4 389 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 1.9e-141 506.9 495 52.1
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.1e-138 497.7 314 72.0
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.3e-137 494.2 367 65.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 2.0e-135 486.9 490 53.5
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 1.8e-120 437.2 269 81.0
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.2e-116 424.5 270 75.2
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 3.9e-110 402.9 385 59.2
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 2.1e-108 397.1 625 36.8
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 3.1e-107 393.3 324 65.1
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 4.4e-98 362.8 220 77.3
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 3.9e-94 349.7 272 65.1
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 2.1e-79 300.8 402 42.3
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.8e-67 261.2 546 30.8
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.8e-67 261.2 158 78.5
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 5.3e-67 259.6 190 69.5
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 7.6e-66 255.8 152 85.5
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.9e-64 251.1 234 57.7
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 4.6e-63 246.5 601 29.1
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.3e-62 245.0 157 75.8
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 7.4e-61 239.2 152 77.6
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 2.5e-56 224.2 139 80.6
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.3e-54 218.4 171 66.1
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 4.8e-52 209.9 866 24.9
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.9e-49 200.7 152 69.7
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.8e-49 200.3 152 69.7
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 1.4e-48 198.4 229 45.4
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 2.7e-47 194.1 163 56.4
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.1e-46 189.9 238 47.9
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 9.7e-45 185.7 109 83.5
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 1.8e-43 181.4 136 66.9
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.4e-40 171.8 131 64.1
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 2.5e-37 161.0 189 48.7
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.4e-35 155.2 111 75.7
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 3.1e-35 154.1 85 89.4
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.8e-09 67.4 73 47.9
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 9.5e-08 62.8 106 38.7
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 2.7e-07 61.2 63 47.6


User provided reference genes

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